Sequence
atgc intronic sequence ATGC exonic sequencegtaaggaaaaaattatttttagagttatgatgcctgcctttgttttgtattttaaattttaaatatcttaaatattaaggttttattttatgtgcactcgttctttgtgtatgttctacgagaatttctgaatttcatttactatctcttctttagTTCACTTAAAAGATCAAATGATAGTACCCGGATTATCATCACAGCTATTATGGGAATTGCCTTTGGATTTTTTGTTGGTATTTCAATTTCATCTGTGCAT
Basic information
species | Glycine max |
transcript | GLYMA13G39990.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G39990.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0004g02700.t01 (Vitis vinifera), 3'ss of exon 2
gtaaggaaaaaattatttttagagttatgatgcctgcctttgttttgtattttaaattttaaatatcttaaatattaaggttttattttatgtgcactcgttctttgtgtatgttctacgagaatttctgaatttcatttactatctcttctttagTTCACTT---AAAAGATCAAATGATAGTACCCGGATTATCATCACAGCTATTATGGGAATTGCCTTTGGATTTTTTGTTGGTATTTCAATTTCATCTGTGCAT
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--------------------------------------------------ttcaaaattattgcattacagttatgaga---tggttgta---atgctaatatacaaagctcaccctgcttaactgccttaagtagttctcctgtttggttcgcagTGGAGTTCTAAAAAAATCACATGACAGTGCCAGGCTTATTATCACAACTATTATGGGAGTTGTCTTTGGATATTTTGTTGGTGTTTCATTTCCATCTGCT---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209728920|gb|BW654987.1|BW654987EST: CTTGACTTGATTGTGGTTGATACTAACTGGACAGGAATAATGCATCGCAA TTCACTTAAAAGATCAAATGATAGTACCCGGATTATCATCACAGCTATTAT
genomic: CTTGACTTGATTGTGGTTGATACTAACTGGACAGGAATAATGCATCGCAAgtaaggaaaa ... tcttctttagTTCACTTAAAAGATCAAATGATAGTACCCGGATTATCATCACAGCTATTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctttgtgtatgttctacgagaatttctgaatttcatttactatctcttctttagTTCACTTAAAAGATCAAATGATAGTACCCGGATTATCATCACAGCTATTATGGGAATTGCCTTTGGATTTTTTGTTGGTATTTCAATTTCATCTGTGCAT
tttcatttactatctc CT-rich tract
aatttcatttactat TA-rich tract