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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaaaaaattatttttagagttatgatgcctgcctttgttttgtattttaaattttaaatatcttaaatattaaggttttattttatgtgcactcgttctttgtgtatgttctacgagaatttctgaatttcatttactatctcttctttagTTCACTTAAAAGATCAAATGATAGTACCCGGATTATCATCACAGCTATTATGGGAATTGCCTTTGGATTTTTTGTTGGTATTTCAATTTCATCTGTGCAT

Basic information

species Glycine max
transcript GLYMA13G39990.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G39990.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0004g02700.t01 (Vitis vinifera), 3'ss of exon 2
gtaaggaaaaaattatttttagagttatgatgcctgcctttgttttgtattttaaattttaaatatcttaaatattaaggttttattttatgtgcactcgttctttgtgtatgttctacgagaatttctgaatttcatttactatctcttctttagTTCACTT---AAAAGATCAAATGATAGTACCCGGATTATCATCACAGCTATTATGGGAATTGCCTTTGGATTTTTTGTTGGTATTTCAATTTCATCTGTGCAT
|| ||| || || | ||| | | || || || | | || | | | || || | | | || | | | ||| | || |||| |||| |||| ||| || || |||| |||||| ||||||||||| ||| |||||||| |||||||||| ||||| || ||||||
--------------------------------------------------ttcaaaattattgcattacagttatgaga---tggttgta---atgctaatatacaaagctcaccctgcttaactgccttaagtagttctcctgtttggttcgcagTGGAGTTCTAAAAAAATCACATGACAGTGCCAGGCTTATTATCACAACTATTATGGGAGTTGTCTTTGGATATTTTGTTGGTGTTTCATTTCCATCTGCT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209728920|gb|BW654987.1|BW654987
EST:     CTTGACTTGATTGTGGTTGATACTAACTGGACAGGAATAATGCATCGCAA                         TTCACTTAAAAGATCAAATGATAGTACCCGGATTATCATCACAGCTATTAT
genomic: CTTGACTTGATTGTGGTTGATACTAACTGGACAGGAATAATGCATCGCAAgtaaggaaaa ... tcttctttagTTCACTTAAAAGATCAAATGATAGTACCCGGATTATCATCACAGCTATTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttgtgtatgttctacgagaatttctgaatttcatttactatctcttctttagTTCACTTAAAAGATCAAATGATAGTACCCGGATTATCATCACAGCTATTATGGGAATTGCCTTTGGATTTTTTGTTGGTATTTCAATTTCATCTGTGCAT
                               tttcatttactatctc  CT-rich tract
 aatttcatttactat  TA-rich tract