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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttattttatattgtgtgatttagtgtattgtttgatagttatcactcaattctcaatagcctattttgttgtgttaatgtctattattcggatctgcagGCTGAGAAGATAGGATTGGACTACATGGATGTTGAGGCCTTGAAGAAGCTTAACAAAAACAAAAAGTTGGTGAAAAAACTAGCCAAAAAATATCATGCCT

Basic information

species Glycine max
transcript GLYMA13G39270.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G39270.2 (Glycine max), 3'ss of exon 2
lower sequence: AT2G27530.1 (Arabidopsis thaliana), 3'ss of exon 3
gttattttatattgtgtgatttagtgtattgtttgatagttatcactcaattctcaatagcctattttgttgtgttaatgtctattattcggatctgcagGCTGAGAAGATAGGATTGGACTACATGGATGTTGAGGCCTTGAAGAAGCTTAACAAAAACAAAAAGTTGGTGAAAAAACTAGCCAAAAAATATCATGCCT
           |  |   | |   | || | |||| |   | |   |   || | ||| |   |||  |       | ||| |  | || |  |    |||| ||||| || ||| |     |||||||||||||||| ||||| ||||||||||| ||||| ||| | || || || || || ||    || ||||| |
----------gtgattgaaatctctatactttttg-tgtatcttgtttggtt-tgaattggtgatt--gacacaa-agtgtttgatgtttgttttgatagGCAGAGAAAATGGGACTTAGTAACATGGATGTTGAGGCTTTGAAAAAGCTTAACAAGAACAAGAAGCTTGTTAAGAAGCTTGCTAAGTCTTACCATGCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207694943|gb|GD676690.1|GD676690
EST:     GCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAGCACGTTGAGGAG                         GCTGAGAAGATAGGATTGGACTACATGGATGTTGAGG
genomic: GCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAGCACGTTGAGGAGgtaacaataa ... ggatctgcagGCTGAGAAGATAGGATTGGACTACATGGATGTTGAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaattctcaatagcctattttgttgtgttaatgtctattattcggatctgcagGCTGAGAAGATAGGATTGGACTACATGGATGTTGAGGCCTTGAAGAAGCTTAACAAAAACAAAAAGTTGGTGAAAAAACTAGCCAAAAAATATCATGCCT
                           tgttaat  putative branch site (score: 3)
                             ttaatgtctattatt  TA-rich tract