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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgatcaactacatttgtctgtaaatttctcatgatgttggtggttatttattggatgcaatttgtgtgaaaccaacaaaaatgttagtcctggtttataatgcactgttctatggggacttatttgttcattttacaaataattgcattaatggtcattctaggttaaaaagttgaatttacacatgcagGTAGAGGGGATTTTCAGAATTAACGCGGACAATGGTCAAGAGGAACATGCTAGGGATCAATTGAATTTGGGAGTGGTCCCAGAAGGCATCGATGTACATT

Basic information

species Glycine max
transcript GLYMA13G39230.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|41146153|gb|CK606364.1|CK606364
EST:     CAATTCTGCTGTTGATGCAAAAGCATTTGTATGTTCAAGGAGGTTTGCAG                         GTAGAGGGGATTTTCAGAATTAACGCGGACAATGGTCAAGAGGAACATGCT
genomic: CAATTCTGCTGTTGATGCAAAAGCATTTGTATGTTCAAGGAGGTTTGCAGgttgatcaac ... acacatgcagGTAGAGGGGATTTTCAGAATTAACGCGGACAATGGTCAAGAGGAACATGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaataattgcattaatggtcattctaggttaaaaagttgaatttacacatgcagGTAGAGGGGATTTTCAGAATTAACGCGGACAATGGTCAAGAGGAACATGCTAGGGATCAATTGAATTTGGGAGTGGTCCCAGAAGGCATCGATGTACATT
          cattaat  putative branch site (score: 3)
                             ttaaaaagttgaattt  TA-rich tract