Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcattttctactccatttcttttaactctaatttgatgtgttatggaaattaatttgaatctgattgatattttgattatttttttcttccagGGAGGGACCGTTATTGGTAGTTGCATCTGGAAGAGACACAATTTCTGTTGCGAGTTCCATAAAACGTTTAGCTCCTGATCTTGTTTTTGTTGTTCAG

Basic information

species Glycine max
transcript GLYMA13G39140.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185645|gb|HO030858.1|HO030858
EST:     CAAGCCGATGCCAATCACATAGTCAATTTAGCTCGCGAAACTTATGAAAA                         GGAGGGACCGCTATTGGTAGTTGCATCTGGAAGAGACACAATTTCTGTTGC
genomic: CAAGCCGATGCCAATCACATAGTCAATTTAGCTCGCGAAACTTATGAAAAgtcattttct ... tttcttccagGGAGGGACCGTTATTGGTAGTTGCATCTGGAAGAGACACAATTTCTGTTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttatggaaattaatttgaatctgattgatattttgattatttttttcttccagGGAGGGACCGTTATTGGTAGTTGCATCTGGAAGAGACACAATTTCTGTTGCGAGTTCCATAAAACGTTTAGCTCCTGATCTTGTTTTTGTTGTTCAG
                                ttttgattattttttt  CT-rich tract
        aaattaatttgaatct  TA-rich tract