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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatattttttctcttttttttatgtcacacaaattcatcgctttaacgatctaagtttttggattccgagtttatcttatgcctatggctttgtttaatttcagGAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG

Basic information

species Glycine max
transcript GLYMA13G39120.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G39120.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G08370.1 (Arabidopsis thaliana), 3'ss of exon 2
gttcatattttttctcttttttttatgtcacacaaattcatcgctttaacgatctaagtttttggattccgagtttatcttatgcctatggctttgtttaatttcagGAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG
       ||  | || |   | ||     |     ||   |  ||||||   |||     | |  | || || |  ||| | |         |||||||  |||||| |  |||||||||||||||||||||||||||||||| ||||| ||||| |
------gttactactttcgatctttaactatgtgtatct-tatctttaatcgtct-----tctcaaatctgattggatccttttt-------tttgtttc-tttcagAAGTACACAACCTCGATTTCAGTTTATTGTGATGAATCGTCGTAATACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213595694|gb|DB962466.1|DB962466
EST:     AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG                         GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG
genomic: AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAGgttcatattt ... ttaatttcagGAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG
EST: gi|213593287|gb|DB969917.1|DB969917
EST:     AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG                         GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG
genomic: AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAGgttcatattt ... ttaatttcagGAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG
EST: gi|209709701|gb|BW673969.1|BW673969
EST:     AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG                         GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG
genomic: AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAGgttcatattt ... ttaatttcagGAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG
EST: gi|151408519|gb|EV278327.1|EV278327
EST:     AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG                         GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG
genomic: AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAGgttcatattt ... ttaatttcagGAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG
EST: gi|9819945|gb|BE555458.1|BE555458
EST:     AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG                         GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG
genomic: AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAGgttcatattt ... ttaatttcagGAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaagtttttggattccgagtttatcttatgcctatggctttgtttaatttcagGAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTG
                                           gtttaat  putative branch site (score: 4)
                                       ctttgttt  CT-rich tract
                                        tttgtttaatttca  TA-rich tract