Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgtgttaattcaagttattttgtgtttgtgtgaattgtcattgctccaagaaaatgacctaattcgatttgactttggatgctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG

Basic information

species Glycine max
transcript GLYMA13G38420.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G38420.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ06425 (Selaginella moellendorffii), 3'ss of exon 1
gtaagcgtgttaattcaagt-tattttgtgtttgtgtgaattgtcattgctccaagaaaatgacc--taatt---cgatttgac----tttggatgctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG
||||| |  ||  ||  | | |      |  | |   |     || ||   |  | |   ||      || |   ||||||| |    |         | | |  | || ||||||||||| |||||||| |||||||| ||||| ||||||||           
gtaaggggattgtttgcattgtgagagattatcgatcgcgccctctttctccagACATTGTGGTGGACAACTGCGCGATTTGCCGGAATCACATCATGGATCTGTGCATCGAGTGCCAGGCAAACCAGGCCAGCGCCACGAGCGAAGAATGCAC-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213610718|gb|DB961193.1|DB961193
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|207844160|gb|GD817411.1|GD817411
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATACCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|192330257|gb|FK020557.1|FK020557
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|151404234|gb|EV274044.1|EV274044
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|151411010|gb|EV280821.1|EV280821
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|193569984|gb|FK526735.1|FK526735
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|209715859|gb|BW674418.1|BW674418
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|21594409|gb|BQ610149.1|BQ610149
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|57574392|gb|CX547367.1|CX547367
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|18038971|gb|BM307265.1|BM307265
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|209715858|gb|BW674417.1|BW674417
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|7589690|gb|AW705459.1|AW705459
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|163921009|gb|EH039455.1|EH039455
EST:     TGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|57574160|gb|CX547135.1|CX547135
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|21677079|gb|BQ629430.1|BQ629430
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|207830059|gb|GD801415.1|GD801415
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGACCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATG
EST: gi|213587487|gb|DB979107.1|DB979107
EST:     TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTTGTGGATAATTGCGCTATTTGCCGCAACCATATCATGGATCTCTgtaagcgtgt ... gctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcattgctccaagaaaatgacctaattcgatttgactttggatgctgctatagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG
            aagaaaat  TA-rich tract