Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgttgccctacacttttctgttgtccaaatggaatgaaagcaatgttgtccacaatccttactccacttaacattatgaatgctttgtgtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTACTGGGTCTAGGGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGAT

Basic information

species Glycine max
transcript GLYMA13G37600.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G37600.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G455828_T01 (Zea mays), 3'ss of exon 1
tatgttgccctacacttttctgttgtccaaatggaatgaaagcaatgttgtccacaatccttactccacttaaca--ttatgaatgctttgtgtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTACTGGGTCTAGGGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGAT
   || ||   | ||  |      || ||  |  ||||||  | ||||  || |      |   ||  ||| |    | |  |||||||| | ||   |||| |||||  | ||||||||||  ||  |||| || || || |||||  | || || || ||||| |||||||| ||||| |||||||||||||||||||| 
ccagtagcaacaaaccatgtgacagtgcagttaaaatgaa--ctatgtgatcaaagcatatggttcaccttgattactgacaaatgctttctattaatgcagCATGGACACCCAGGTGAAGCTTGCTGTTGTGGTGAAGGTGATGGGCAGGACCGGCTCCAGGGGTCAGGTGACCCAGGTCAGAGTGAAGTTTTTGGATGAC

upper sequence: GLYMA13G37600.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G030293_T02 (Zea mays), 3'ss of exon 1
tatgttgccctacacttttctgttgtccaaatggaatgaaagcaatgttgtccacaatccttactccacttaaca--ttatgaatgctttgtgtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTACTGGGTCTAGGGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGAT
    | |  | | |   |      || ||  || ||||||  | |||    | |      | | ||  ||| | |  |||| |||||||| |||    |||| |||||  | || |||||||  ||  |||| || || || |||||  | || || || ||||| |||||||| ||||| ||||||||||| |||||||| 
ccaatagtaccaaatcatgtgacagtgcagttgaaatgaa--ccatgcgaacaaagcaaatgattcaccttgataacttataaatgctttctgtcaatgcagCATGGACACCCAAGTGAAGCTTGCTGTTGTGGTAAAGGTGATGGGCAGGACCGGCTCCAGGGGTCAGGTGACCCAGGTCAGAGTGAAGTTCTTGGATGAC

upper sequence: GLYMA13G37600.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G10090.1 (Arabidopsis thaliana), 3'ss of exon 1
tatgttgccctacacttttctgttgtccaaatggaatgaaagcaatgttgtccacaatccttactccactt--aacatta------tgaatgctttg----tgtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTACTGGGTCTAGGGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGAT
          || ||  |  ||   | ||||||  |  ||  |  | ||    |  ||  | ||| |  ||  || |||       |||||| |||     ||||  | ||| ||||| |||||| | ||||||||  |||| || ||||| |||||  | ||||| || ||||| || |||||||||||||||||||||||    ||    
----------tatacagtcttg--attcaaatgtgaacaattctctttttctaaggattttcacttcttttgtaaaatttggtctctgaatgtttttgttttgttgaatcagAATGGATTCTCAGATCAAGCACGCTGTTGTAGTGAAAGTGATGGGAAGGACTGGATCAAGGGGTCAAGTGACTCAGGTTAGAGTGAAGTTCACTGACTCG

upper sequence: GLYMA13G37600.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g07210.t01 (Vitis vinifera), 3'ss of exon 1
---tatgttgccct-acacttttctgttgtccaaatggaatgaaagcaatgttgtccacaatccttactccacttaac-attatgaatgctttgtgtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTACTGGGTCTAGGGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGAT
    |  ||||  | | |    |     |   |||   | | || | ||  | || |  | |  |||       |||| |  |    |  || |     | ||   |||||  |   ||||||||| ||  | || || |||||||||||||| ||||| || ||||| |||||||| ||||| ||||||||||||||||     
aatgagtttgcttttatagaacttgaaaggaaaaaccaattaaatgaaaaatggtgcttagtatttatgaattataaccagcaattttctttggcagcagTGCGAAATGGATGCCGGGGTGAAGCATGCTGTGGTGGTGAAAGTTATGGGTCGAACTGGATCAAGGGGTCAGGTGACACAGGTGAGAGTGAAGTTTTTGG-----

upper sequence: GLYMA13G37600.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g07210.t01 (Vitis vinifera), 3'ss of exon 4
--tatgttgccctacacttttctgt-tgtccaaatggaatgaaagcaatgttgtccacaat-ccttactccacttaacattatgaatgctttgtgtttga---gcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTACTGGGTCTAGGGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGAT
  ||  |   | |  | |  ||| | |  | | |  |||  ||  |||| || |     || || |  | ||  ||  || |   ||  | | ||||||    |||  |||||||||  ||||||||| ||  | || || |||||||||||||| ||||| || || || |||||||| ||||| || |||||||||||||     
tatacatattctttaaatagtctatgtaactagaaagaa--aatacaatcttttaattgatgcccttatgcatctattataaatgattttgtttgtttgcagTGCAAAATGGAATCTGGGGTGAAGCATGCTGTGGTGGTGAAAGTTATGGGTCGAACTGGCTCAAGAGGTCAGGTGACCCAGGTGAGGGTGAAGTTTTTGG-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5760503|gb|AI965866.1|AI965866
EST:     GTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: GTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|151412733|gb|EV282545.1|EV282545
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|24206215|gb|BU965468.1|BU965468
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|33388253|gb|CA851460.1|CA851460
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|151403805|gb|EV273615.1|EV273615
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|208269015|gb|GE069828.1|GE069828
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTC
EST: gi|193334458|gb|FK298836.1|FK298836
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|193361426|gb|FK327330.1|FK327330
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCTCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|19934863|gb|BQ079893.1|BQ079893
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|208121550|gb|GD916179.1|GD916179
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|208107406|gb|GD903765.1|GD903765
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|207709223|gb|GD691997.1|GD691997
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|208228966|gb|GE024302.1|GE024302
EST:     AGCCGTCGCTATCCTAGTCTCTTC-T-CCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTC
EST: gi|16280883|gb|BI944196.1|BI944196
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|7233151|gb|AW568500.1|AW568500
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|14126706|gb|BG791144.1|BG791144
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|151412024|gb|EV281835.1|EV281835
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTCCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|192323607|gb|FK017473.1|FK017473
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|208104536|gb|GD904975.1|GD904975
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|208067682|gb|GD864874.1|GD864874
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCA-TTCAG-TTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|209696955|gb|BW660520.1|BW660520
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|6747825|gb|AW318281.1|AW318281
EST:     TCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: TCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|208035885|gb|GD835214.1|GD835214
EST:     TCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: TCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|193356363|gb|FK323076.1|FK323076
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGCTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|207700788|gb|GD683237.1|GD683237
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|19934809|gb|BQ079839.1|BQ079839
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|208329567|gb|GE127144.1|GE127144
EST:     GTCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: G-CCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|193348257|gb|FK309465.1|FK309465
EST:     GCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTA
genomic: GCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAG-TTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTA
EST: gi|213602715|gb|DB956623.1|DB956623
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|23735104|gb|BU765818.1|BU765818
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|207823392|gb|GD795733.1|GD795733
EST:     GCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTA
genomic: GCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAG-TTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTA
EST: gi|207727093|gb|GD701085.1|GD701085
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|298174800|gb|HO017909.1|HO017909
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCTCTTGTTGTCAAAGTTGTGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|208177730|gb|GD977389.1|GD977389
EST:     TCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: TCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|193493687|gb|FK461333.1|FK461333
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|31470842|gb|CD412870.1|CD412870
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|192294820|gb|FG987509.1|FG987509
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|16996976|gb|BM086348.1|BM086348
EST:     TTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: TTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|10256373|gb|BE824139.1|BE824139
EST:     ANNCGTCGCTATCNNAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
EST: gi|209696956|gb|BW660521.1|BW660521
EST:     AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAG                         GATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC
genomic: AGCCGTCGCTATCCTAGTCTCTTCTTCCCCTCTACCCATTTCAGTTTCAGgtatcatcac ... gtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgtccacaatccttactccacttaacattatgaatgctttgtgtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTACTGGGTCTAGGGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGAT
                        ttaacattatgaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatgttgccctacacttttctgttgtccaaatggaatgaaagcaatgttgtccacaatccttactccacttaacattatgaatgctttgtgtttgagcagGATGGAATCTCAGGTGAAGCACGCCCTTGTTGTCAAAGTTATGGGTCGTACTGGGTCTAGGGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGAT

- - - -ccctaca
- - - - - - - - - - tgttgtc
- - - - - - - - - - - - - - - - ggaatga
- - - - - - - - - - - - - - - - - - - - agcaatg
- - - - - - - - - - - - - - - - - - - - - - - - tgtccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgct