Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggatttgtgtctcattctctgccacaggttttgttttggtgtgatatattttttattttttattttgtgcaagtgaattaagggatgttgaaatgttctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG

Basic information

species Glycine max
transcript GLYMA13G36690.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193644409|gb|FK589875.1|FK589875
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTT
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTT
EST: gi|151407354|gb|EV277169.1|EV277169
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|20207833|gb|BQ133922.1|BQ133922
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|151407823|gb|EV277638.1|EV277638
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|213605462|gb|DB966955.1|DB966955
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|208295179|gb|GE095194.1|GE095194
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCT
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCT
EST: gi|58017492|gb|CX704234.1|CX704234
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|208234236|gb|GE034469.1|GE034469
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATT
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATT
EST: gi|298166008|gb|HO008979.1|HO008979
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|298198708|gb|HO042071.1|HO042071
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|209720746|gb|BW657748.1|BW657748
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|151411607|gb|EV281418.1|EV281418
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGTAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|193425370|gb|FK387845.1|FK387845
EST:     CTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|193367729|gb|FK332499.1|FK332499
EST:     TCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: TCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|298198967|gb|HO042330.1|HO042330
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTA
EST: gi|13789247|gb|BG651838.1|BG651838
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|151403064|gb|EV272874.1|EV272874
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|213600585|gb|DB960133.1|DB960133
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|209719364|gb|BW674442.1|BW674442
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGTGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|209725077|gb|BW659785.1|BW659785
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|15813608|gb|BI785883.1|BI785883
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|298187900|gb|HO031857.1|HO031857
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|298167729|gb|HO012992.1|HO012992
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|193337192|gb|FK302922.1|FK302922
EST:     CTGTGTTTTACTATTAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGA
genomic: CTGTGTTTTACTA-TAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGA
EST: gi|21602661|gb|BQ612992.1|BQ612992
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|209729013|gb|BW651765.1|BW651765
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|17963820|gb|BM270564.1|BM270564
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|6482317|gb|AW201586.1|AW201586
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|17963890|gb|BM270633.1|BM270633
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|13311577|gb|BG405219.1|BG405219
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|12690801|gb|BG157137.1|BG157137
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTNTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|209712342|gb|BW671192.1|BW671192
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|213602554|gb|DB968864.1|DB968864
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|209721040|gb|BW666297.1|BW666297
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|207718168|gb|GD698788.1|GD698788
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         AAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|209724785|gb|BW672568.1|BW672568
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|298198678|gb|HO042041.1|HO042041
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTT
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTT
EST: gi|6566303|gb|AW233976.1|AW233976
EST:     CTTATCCCTTCGGCTGCATCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCATGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|209712185|gb|BW681391.1|BW681391
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTG
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTG
EST: gi|209709689|gb|BW668225.1|BW668225
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|213607166|gb|DB967015.1|DB967015
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|209703001|gb|BW656058.1|BW656058
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATCATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|298178495|gb|HO024230.1|HO024230
EST:     CTAATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGAAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|23726510|gb|BU761249.1|BU761249
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|16348539|gb|BI974134.1|BI974134
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|209719931|gb|BW666014.1|BW666014
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|24205692|gb|BU964945.1|BU964945
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGATATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|27427519|gb|CA939039.1|CA939039
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTTAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|213598761|gb|DB968232.1|DB968232
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|298169360|gb|HO020720.1|HO020720
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCCTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|209705111|gb|BW653334.1|BW653334
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|192301450|gb|FG998414.1|FG998414
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATG
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATG
EST: gi|21285870|gb|BQ473741.1|BQ473741
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|6567114|gb|AW234741.1|AW234741
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATNTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|298183717|gb|HO028930.1|HO028930
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|24136596|gb|BU927106.1|BU927106
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|9258319|gb|BE346466.1|BE346466
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTNTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|10848239|gb|BF071695.1|BF071695
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|9258572|gb|BE346719.1|BE346719
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCACGCAATGAGAC
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|208036159|gb|GD836090.1|GD836090
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTT-ACTATAAGAT                         A
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcag-
EST: gi|208036159|gb|GD836090.1|GD836090
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTT-ACTATAAGAT                         A
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcag-
EST: gi|58022604|gb|CX709345.1|CX709345
EST:     TTATCCTTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: TTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|193313360|gb|FK282017.1|FK282017
EST:     CTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|151403934|gb|EV273744.1|EV273744
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|298178645|gb|HO024380.1|HO024380
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|6666341|gb|AW277800.1|AW277800
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|254316526|gb|GR828063.1|GR828063
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|151398789|gb|EV268660.1|EV268660
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAAAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|192304318|gb|FG993574.1|FG993574
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
EST: gi|8669351|gb|BE190458.1|BE190458
EST:     CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGAT                         GAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA
genomic: CTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATgtgaggattt ... ctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttttattttgtgcaagtgaattaagggatgttgaaatgttctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG
                                           ttctgctt  CT-rich tract
     ttttattttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaggatttgtgtctcattctctgccacaggttttgttttggtgtgatatattttttattttttattttgtgcaagtgaattaagggatgttgaaatgttctgcttgcagGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT