1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atcaagtttacaatagtttgaaaacagaacatcttgtttcatgtcatttatctctttcttttttctttctttctgtttaatacttttttctgtgcttcagGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGGCAAGGTGCATTTGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTGGCA
species | Glycine max |
transcript | GLYMA13G36140.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGAGTAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAA GGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGGCAAGGTGCEST: gi|15813093|gb|BI785368.1|BI785368
genomic: AAGAGTAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAAgtatgtttgt ... tgtgcttcagGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGGCAAGGTGC
EST: AAGAGTAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAA GGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGGCAAGGTGCEST: gi|209713130|gb|BW653839.1|BW653839
genomic: AAGAGTAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAAgtatgtttgt ... tgtgcttcagGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGGCAAGGTGC
EST: AAGAGTAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAA GGATTTGCCAAAGGCAACATATAATTTTACAACACTC
genomic: AAGAGTAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAAgtatgtttgt ... tgtgcttcagGGATTTGCAAAAGGCAACATATAATTTTACAACACTC
atttatctctttcttttttctttctttctgtttaatacttttttctgtgcttcagGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGGCAAGGTGCATTTGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTGGCA
gtttaat putative branch site (score: 4)
tctttcttttttcttt CT-rich tract
tgtttaatactttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaagtttacaatagtttgaaaacagaacatcttgtttcatgtcatttatctctttcttttttctttctttctgtttaatacttttttctgtgcttcagGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGGCAAGGTGCATTTGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - aacagaac