Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaatttgttcaacaaggggatcatacatatcaagtgtcataatttaatcgaagtgattttttttccaatgataaacactaaattattatgtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGT

Basic information

species Glycine max
transcript GLYMA13G35800.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G35800.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv19s0014g03660.t01 (Vitis vinifera), 3'ss of exon 2
taaatttgttcaacaaggggatcatacatatcaagtgtcataatttaatcgaagtgattttttttccaatgataa-acactaaattattatgtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGT
|   |    |   |        | | |  || ||     | | | |  | |||   | | |      ||||||   ||  | |     ||  |||  | |||| ||||| ||| | ||||| |||||||||||||| || |||||||||||||| || || ||||||||| | |||||||||||||| || ||| | ||||
ttgctcccctgttcctcaaaccctttctgattaatctgaacagtctg-tagaatgtaatatgaaggtaatgatgctactttgatcctataaatggttttagGTGATCCACGGGCGTTGGGCTATGCTTGGAGCACTGGGCTGCATCACCCCAGAAGTCCTTGAGAAGTGGCTTAGAGTGGACTTCAAAGAACCAATCTGGT

upper sequence: GLYMA13G35800.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0181g00200.t01 (Vitis vinifera), 3'ss of exon 2
taaatttgttcaacaaggggatcatacatatcaagtgtcataatttaatcgaagtgattttttttc--caatgat--aaacactaaattattatgtggaata------agGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGT
                  | |    | ||      |    |||| | |||    |       |  |  |||||    |||   |||||| |  |||| |  |      |||| ||||| ||| | ||||| ||||| |||||  | || |||||||||||||| || || ||||||||| |||  |||||||||||||| ||||| ||||
------------------gtaattcaaattcttcctcctgtaatctgatctgcattgccaagtgccaacaatgccggaaatggtaaattgtc-tgtgaaccatgttgtagGTAATCCACGGGCGGTGGGCTATGCTGGGAGCCTTTGGCTGCATCACCCCAGAAGTTCTTGAGAAGTGGGTGAAGGTGGACTTCAAGGAACCAGTTTGGT

upper sequence: GLYMA13G35800.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0181g00180.t01 (Vitis vinifera), 3'ss of exon 2
taaatttgttcaacaaggggatcatacatatcaagtgtcataatttaatcgaagtgattttttttccaatgataaacactaaatta-ttatgtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGT
     |  |||||        || |  |     |    |||     | |   |   ||         |||| ||||   |   | |   |||| | |   ||| ||||| ||| | ||||| ||||| |||||  | || |||||||||||||| || || ||||||||| |||  |||||||||||||| ||||| ||||
----gtaattcaatttcttcctcctgtaatctgatctgcattgccaagtgccaacaatgccg---gaaatggtaaattgtctgtgaaccatgttgta---gGTAATCCACGGGCGGTGGGCTATGCTGGGAGCCTTTGGCTGCATCACCCCAGAAGTTCTTGAGAAGTGGGTGAAGGTGGACTTCAAGGAACCAGTTTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699119|gb|BW656159.1|BW656159
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|208165598|gb|GD964104.1|GD964104
EST:     TTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: TTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|13125398|gb|BG315968.1|BG315968
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAG-ACA-GGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|298188175|gb|HO034868.1|HO034868
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCGCTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|298189715|gb|HO038118.1|HO038118
EST:     TTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|213619883|gb|DB971142.1|DB971142
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31476548|gb|CD418576.1|CD418576
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|15338148|gb|BI498804.1|BI498804
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|213587627|gb|DB971350.1|DB971350
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|12690301|gb|BG156637.1|BG156637
EST:     GAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: GAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|151396868|gb|EV266741.1|EV266741
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|209713663|gb|BW681829.1|BW681829
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|120532894|gb|EH261027.1|EH261027
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|209729282|gb|BW660342.1|BW660342
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|12689034|gb|BG155379.1|BG155379
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31476384|gb|CD418412.1|CD418412
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGCCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|213603642|gb|DB962746.1|DB962746
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|9259805|gb|BE347952.1|BE347952
EST:     TGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: TGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|9983342|gb|BE657450.1|BE657450
EST:     ATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGNNCTTGAG                         GTTATCCATGGGAGATGGGCCATGNNTGGAGCACTAGGATGCATCACCCCA
genomic: ATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|13480226|gb|BG509569.1|BG509569
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|15285480|gb|BI469371.1|BI469371
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|213605069|gb|DB956388.1|DB956388
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|17964455|gb|BM271190.1|BM271190
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31462895|gb|CD404923.1|CD404923
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|209715066|gb|BW677109.1|BW677109
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|6481755|gb|AW201026.1|AW201026
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|6913331|gb|AW394861.1|AW394861
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|213600306|gb|DB970284.1|DB970284
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|151394840|gb|EV264711.1|EV264711
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCACCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|298193724|gb|HO040372.1|HO040372
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|209714926|gb|BW682091.1|BW682091
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|209721880|gb|BW666449.1|BW666449
EST:     CTGNNNNNNNTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|7326751|gb|AW620549.1|AW620549
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|151406488|gb|EV276303.1|EV276303
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|213608765|gb|DB957185.1|DB957185
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|20813285|gb|BQ297763.1|BQ297763
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|209724746|gb|BW677788.1|BW677788
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|15286840|gb|BI470731.1|BI470731
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|151399855|gb|EV269726.1|EV269726
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGGACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31465045|gb|CD407073.1|CD407073
EST:     TTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGCCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: TTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|298170300|gb|HO018924.1|HO018924
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|7232923|gb|AW568274.1|AW568274
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|120533060|gb|EH261193.1|EH261193
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|17519354|gb|BM188396.1|BM188396
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|7030313|gb|AW460096.1|AW460096
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTATGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|209701541|gb|BW673108.1|BW673108
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|15287340|gb|BI471231.1|BI471231
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|10231467|gb|BE800355.1|BE800355
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|209705843|gb|BW675948.1|BW675948
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|6134692|gb|AW133085.1|AW133085
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTATGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|26268182|gb|CA819245.1|CA819245
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|213588895|gb|DB969542.1|DB969542
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatcgaagtgattttttttccaatgataaacactaaattattatgtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGT
                               cactaaa  putative branch site (score: 2)
           attttttttccaatga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taaatttgttcaacaaggggatcatacatatcaagtgtcataatttaatcgaagtgattttttttccaatgataaacactaaattattatgtggaataagGTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - catacat
- - - - - - - - - - - - - - - -caagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaac