1 5' 3' | 2 5' 3' |
...attctattatctaagttttgttcatgaattaaatattgtgctttatatatccctttgggtgatttctgaatttggtgctttggattttgtgtgtctatagCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGTCACCCATGGAGCATGACAGGGAAGATTCAATGGATGACATGATTGGAG
species | Glycine max |
transcript | GLYMA13G35560.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAGGCCTCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACACTCTAAGG CTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGEST: gi|12490021|gb|BG043542.1|BG043542
genomic: ATAGGCCTCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACACTCTAAGGgtaattcatt ... gtgtctatagCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGG
EST: ATAGGCCTCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACACTCTAAGG CTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGEST: gi|22522499|gb|BU081310.1|BU081310
genomic: ATAGGCCTCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACACTCTAAGGgtaattcatt ... gtgtctatagCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGG
EST: GAAAAACACTCTAAGG CTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGEST: gi|193459836|gb|FK425191.1|FK425191
genomic: GAAAAACACTCTAAGGgtaattcatt ... gtgtctatagCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGG
EST: CCTCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACACTCTAAGG CTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGEST: gi|193563813|gb|FK517936.1|FK517936
genomic: CCTCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACACTCTAAGGgtaattcatt ... gtgtctatagCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGG
EST: ATAGGCCTCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACACTCTAAGG CTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGG
genomic: ATAGGCCTCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACACTCTAAGGgtaattcatt ... gtgtctatagCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGG
tatatccctttgggtgatttctgaatttggtgctttggattttgtgtgtctatagCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGTCACCCATGGAGCATGACAGGGAAGATTCAATGGATGACATGATTGGAG
tgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctattatctaagttttgttcatgaattaaatattgtgctttatatatccctttgggtgatttctgaatttggtgctttggattttgtgtgtctatagCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGTCACCCATGGAGCATGACAGGGAAGATTCAATGGATGACATGATTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - catgaat
- - - - - - - - - - - - - - - - - - - tgcttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgct