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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttgtttttccatttggccttgttttcaattcttaattcacaaacatctatcttgaatctgggtaatagcatcttttttacgtgagcacacaaactgcatatttagttattgtccttgtagatttctgttaattgggttcttgccctcttccttttcagCATGCCCTGTGTGTTATATTCCAGTGAAGCAAGCTATAGCTAGTATGCCAGGTTCCCCATCAGAATCTCCTATACTTCGCACTTTGACATATGTGCATGA

Basic information

species Glycine max
transcript GLYMA13G35210.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G35210.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv19s0014g02710.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtcttgtttttccatttggccttgttttcaattcttaattcacaaacatctatcttgaatctgggtaatagcatcttttttacgtgagcacacaaactgcatatttagttattgtccttgtagatttctgttaattgggttcttgccctcttccttttcagCATGCCCTGTGTGTTATATTCCAGTGAAGCAAGCTATAGCTAGTATGCCAGGTTCCCCATCAGAATCTCCTATACTTCGCACTTTGACATATGTGCATGA
                                                           ||| | |  |  |    || || |       |      || |||||||||||||   ||||||   | | | || || | |    | ||| ||| ||   ||||||||||||| ||||||||  |||||||| |||| ||||| ||||| || ||| | ||| ||||   ||| ||| | |||      || |  ||||| |||||
-----------------------------------------------------------tgagtatttgagaagctatattatcagttaaaatgacaaagctgcatatttagtatatgtcctaacacagtgctttttact----ttttgtcctttt--gtttcagCATGCCCAGTGTGTTACCTTCCAGTGGAGCAGGCTATTGCTAGCATCCCAAGCTCCTCATCCCCATCACCTCTGCTTAAACAGTTAAATTATGTTCATGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttattgtccttgtagatttctgttaattgggttcttgccctcttccttttcagCATGCCCTGTGTGTTATATTCCAGTGAAGCAAGCTATAGCTAGTATGCCAGGTTCCCCATCAGAATCTCCTATACTTCGCACTTTGACATATGTGCATGA
                      tgttaat  putative branch site (score: 3)
                                 ttcttgccctcttcct  putative PPT
                      tgttaatt  TA-rich tract