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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcctgctgtgcttacttgttgaattgttacagattagatgagcttttcatgttaccattgtcttttcctgctgtagGTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTGACTGATACTGTTCTCGTGGTAGCTCTTTCGAGAAAGTATGGAAAACGAC

Basic information

species Glycine max
transcript GLYMA13G34570.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397192|gb|EV267065.1|EV267065
EST:     TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAA                         GTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTG
genomic: TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAAgtaagtttcc ... cctgctgtagGTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTG
EST: gi|207752598|gb|GD724940.1|GD724940
EST:     TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAA                         GTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTG
genomic: TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAAgtaagtttcc ... cctgctgtagGTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTG
EST: gi|193313985|gb|FK282460.1|FK282460
EST:     TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAA                         GTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTG
genomic: TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAAgtaagtttcc ... cctgctgtagGTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTG
EST: gi|19452475|gb|BM953885.1|BM953885
EST:     TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAA                         GTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGG
genomic: TTCATGAAATAGTGGGTCGACCAGCTTCATGGTTGTTTAGTGAGGACAAAgtaagtttcc ... cctgctgtagGTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgttacagattagatgagcttttcatgttaccattgtcttttcctgctgtagGTGAGAGTGTTCTATGCTGTGAGATTCTTTCTCGGTCTTCTCTCTGTTTTGACTGATACTGTTCTCGTGGTAGCTCTTTCGAGAAAGTATGGAAAACGAC
                                 ccattgtcttttcct  CT-rich tract
           attagat  TA-rich tract