1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aatatactggattttatgtgttcttgcattcctctttgacttttatgaactggaaaactgtttcgcagtgatgttaagaacataaaatgttcttgtgcagGTCCAAGAAGTATATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCTAAGAAACTGGAAGAACTTGGAAATTTGATAACCAGTTTGGATGCTGGGG
species | Glycine max |
transcript | GLYMA13G34560.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTTCCTTGATATTCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACA GTCCAAGAAGTATATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCTEST: gi|209726084|gb|BW675258.1|BW675258
genomic: GGTTCCTTGATATTCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACAgtgggttttt ... tcttgtgcagGTCCAAGAAGTATATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCT
EST: GGTTCCTTGATATTCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACA GTCCAAGAAGTATATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCT
genomic: GGTTCCTTGATATTCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACAgtgggttttt ... tcttgtgcagGTCCAAGAAGTATATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCT
tgaactggaaaactgtttcgcagtgatgttaagaacataaaatgttcttgtgcagGTCCAAGAAGTATATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCTAAGAAACTGGAAGAACTTGGAAATTTGATAACCAGTTTGGATGCTGGGG
tgttctt CT-rich tract
ttaagaacataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatactggattttatgtgttcttgcattcctctttgacttttatgaactggaaaactgtttcgcagtgatgttaagaacataaaatgttcttgtgcagGTCCAAGAAGTATATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCTAAGAAACTGGAAGAACTTGGAAATTTGATAACCAGTTTGGATGCTGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- -atactgg
- - - - - - - - tgtgttc
- - - - - - - - - - - - -gcattcc
- - - - - - - - - - - - - - - - - - - - - -tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtt