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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtctttttcttggtaacaggatttgcttatcaaattgctggattctgtaaatcgttataccagaaatgagtaaaaacttatattcttctatttcttgcagTTTGGGGTGTATGCAATCATGCGTTTCATTTGCACTGTATCCTGAAATGGGTGCATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGTGAATG

Basic information

species Glycine max
transcript GLYMA13G34030.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G34030.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv15s0046g03770.t01 (Vitis vinifera), 3'ss of exon 2
gtctttttcttggtaacaggatttgcttatcaaattgctggattctgtaaatcgttataccagaaatgagtaaaaacttatattcttctatt-tcttgcagTTTGGGGTGTATGCAATCATGCGTTTCATTTGCACTGTATCCTGAAATGGGTGCATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGTGAATG
 |  | |   |   || | ||||     | |   |   |   || |   ||| | |||      ||  | | |     |  |   || | || || ||||||||||||||  ||||| ||||| |||||| | || || ||| ||||||||||| |||| |||||  | |||||||||||||||||||||||| | |||||
-ttatatatataaaaaaaagattaaagaaacttttaagttttttttaggaattggtatcaatccaactaatgattctattaaccattgttttgtcctgcagTTTGGGGTGCTTGCAACCATGCATTTCATCTCCATTGCATCTTGAAATGGGTGAATTCGCAGACTCCTCAAGCGCATTGCCCCATGTGCCGTAGGGAATG

upper sequence: GLYMA13G34030.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0060g00290.t01 (Vitis vinifera), 3'ss of exon 5
gtctttttcttggtaacaggatttgcttatcaaattgctggattctgtaaatcgttataccagaaatgagtaaaaacttatattcttctatt-tcttgcagTTTGGGGTGTATGCAATCATGCGTTTCATTTGCACTGTATCCTGAAATGGGTGCATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGTGAATG
 |  | |   |   || | ||||     | |   |   |   || |   ||| | |||      ||  | | |     |  |   || | || || ||||||||||||||  ||||| ||||| || ||| | || || ||| ||||||||||| |||| |||||  | |||||||||||||||||||||||| | |||||
-ttatatatataaaaaaaagattaaagaaacttttaagtttttttttggaattggtatcaatccaactaatgattctattaaccattgttttgtcctgcagTTTGGGGTGCTTGCAACCATGCATTCCATCTCCATTGCATCTTGAAATGGGTGAATTCGCAGACTCCTCAAGCGCATTGCCCCATGTGCCGTAGGGAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaaatcgttataccagaaatgagtaaaaacttatattcttctatttcttgcagTTTGGGGTGTATGCAATCATGCGTTTCATTTGCACTGTATCCTGAAATGGGTGCATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGTGAATG
                                   tattcttctatttctt  CT-rich tract
                         taaaaacttatattct  TA-rich tract