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gcaagtgtaatgaatcttctatttagttactatttttgctcactgagagtggggatttagctaactagttctgtttctgggtttatcagTGCCTGGTATCAACTCCATCTTGTGAAGGCAGAGAAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTTTGG
species | Glycine max |
transcript | GLYMA13G33920.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAAAGCTTCATCTGGGTATGGCAAGCCTCCATGGGTATTTAGAGGCAG TGCCTGGTATCAACTCCATCTTGTGAAGGCAGAGAAAGCTCGAGCTTACATEST: gi|151397360|gb|EV267233.1|EV267233
genomic: GCAAAAGCTTCATCTGGGTATGGCAAGCCTCCATGGGTATTTAGAGGCAGgcaagtgtaa ... ggtttatcagTGCCTGGTATCAACTCCATCTTGTGAAGGCAGAGAAAGCTCGAGCTTACAT
EST: GCAAAAGCTTCATCTGGGTATGGCAAGCCTCCATGGGTATTTAGAGGCAG TGCCTGGTATCAACTCCATCTTGTGAAGGCAGAGAAAGCTCGAGCTTACATEST: gi|10845804|gb|BF068846.1|BF068846
genomic: GCAAAAGCTTCATCTGGGTATGGCAAGCCTCCATGGGTATTTAGAGGCAGgcaagtgtaa ... ggtttatcagTGCCTGGTATCAACTCCATCTTGTGAAGGCAGAGAAAGCTCGAGCTTACAT
EST: GCAAAAGCTTCATCTGGGTATGGCAAGCCTCCATGGGTATTTAGAGGCAG TGCCTGGTATCAACTCCATCTTGTGAAGGCAGAGAAAGCTCGAGCTTACATEST: gi|192294635|gb|FG986484.1|FG986484
genomic: GCAAAAGCTTCATCTGGGTATGGCAAGCCTCCATGGGTATTTAGAGGCAGgcaagtgtaa ... ggtttatcagTGCCTGGTATCAACTCCATCTTGTGAAGGCAGAGAAAGCTCGAGCTTACAT
EST: GCAAAAGCTTCATCTGGGTATGGCAAGCCTCCATGGGTATTTAGAGGCAG TGCCTGGTATCAACTCCATCTTGTGAAGGCAGAGAAAGCTCGAGCTTACAT
genomic: GCAAAAGCTTCATCTGGGTATGGCAAGCCTCCATGGGTATTTAGAGGCAGgcaagtgtaa ... ggtttatcagTGCCTGGTATCAACTCCATCTTGTGAAGGCAGAGAAAGCTCGAGCTTACAT
tttgctcactgagagtggggatttagctaactagttctgtttctgggtttatcagTGCCTGGTATCAACTCCATCTTGTGAAGGCAGAGAAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTTTGG
agctaac putative branch site (score: 2)
tttatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgtaatgaatcttctatttagttactatttttgctcactgagagtggggatttagctaactagttctgtttctgggtttatcagTGCCTGGTATCAACTCCATCTTGTGAAGGCAGAGAAAGCTCGAGCTTACATTCCAAAAGAATTCAAATTGGTTGAAGCTTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC