1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggttgattcctgaaggctgatagaatgatagatgaatgatgcattttggcgtttatcattgtgagtgacgcaatagtctcaataatgtctgaaatttcagGGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAAAAAGGATCTGCCCTTTTTGTAGAAGGAGAAAAACCAATTCAGCAGCCTGCCATACTTGCTAAAACAG
species | Glycine max |
transcript | GLYMA13G33840.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAATGCCATGAATTG GGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAAAAAGGATCTGCCCTTTTTEST: gi|16279653|gb|BI943547.1|BI943547
genomic: GAAATGCCATGAATTGgtcagttcaa ... gaaatttcagGGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAAAAAGGATCTGCCCTTTTT
EST: CAGAAAGTTTTGAAGAGATTGCACAGGCTGCTTTGAAATGCCATGAATTG GGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAAAAAGGATCTGCCCTTTTTEST: gi|16281857|gb|BI944705.1|BI944705
genomic: CAGAAAGTTTTGAAGAGATTGCACAGGCTGCTTTGAAATGCCATGAATTGgtcagttcaa ... gaaatttcagGGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAAAAAGGATCTGCCCTTTTT
EST: CAGAAAGTTTTGAAGAGATTGCACAGGCTGCTTTGAAATGCCATGAATTG GGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAAAAAGGATCTGCCCTTTTTEST: gi|254334364|gb|GR844149.1|GR844149
genomic: CAGAAAGTTTTGAAGAGATTGCACAGGCTGCTTTGAAATGCCATGAATTGgtcagttcaa ... gaaatttcagGGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAAAAAGGATCTGCCCTTTTT
EST: GTTTTGAAGAGATTGCACAGGCTGCTTTGAAATGCCATGAATTG GGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAAAAAGGATCTGCCCTTTTTEST: gi|15813964|gb|BI786239.1|BI786239
genomic: GTTTTGAAGAGATTGCACAGGCTGCTTTGAAATGCCATGAATTGgtcagttcaa ... gaaatttcagGGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAAAAAGGATCTGCCCTTTTT
EST: CAGAAAGTTTTGAAGAGATTGCACAGGCTGCTTTGAAATGCCATGAATTG GGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAAAAAGGATCTGCCCTTTTT
genomic: CAGAAAGTTTTGAAGAGATTGCACAGGCTGCTTTGAAATGCCATGAATTGgtcagttcaa ... gaaatttcagGGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAAAAAGGATCTGCCCTTTTT
ttggcgtttatcattgtgagtgacgcaatagtctcaataatgtctgaaatttcagGGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAAAAAGGATCTGCCCTTTTTGTAGAAGGAGAAAAACCAATTCAGCAGCCTGCCATACTTGCTAAAACAG
tttatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttgattcctgaaggctgatagaatgatagatgaatgatgcattttggcgtttatcattgtgagtgacgcaatagtctcaataatgtctgaaatttcagGGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAAAAAGGATCTGCCCTTTTTGTAGAAGGAGAAAAACCAATTCAGCAGCCTGCCATACTTGCTAAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- -tgattcc
- - - - - - -aggctga
- - - - - - - - - - - - - - - - tgaatga
- - - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtga