Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcttgcttctgcagtctgcacactttgagttgtgctaaaattttgggcagaatgaatttgatctactcacaagaaatttgcagatgtatatgatgttggtgatgtcataatattcacaattttgtaaattgatcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGGACATGGCAGTTTGTTGTTGTCCGTCCAGTATGTTCTGTTCTGATGATTG

Basic information

species Glycine max
transcript GLYMA13G31920.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G31920.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G025242_T02 (Zea mays), 3'ss of exon 3
gtatggcttgcttctgcagtctgcacactttgagttgtgctaaaattttgggcagaatgaatttgatctactcacaagaaatttgcagatgtatatg-atgttggtgatgtcataatattcacaattttgtaaattgatcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGGACATGGCAGTTTGTTGTTGTCCGTCCAGTATGTTCTGTTCTGATGATTG
                                              ||   ||| |||   ||  || ||    ||     ||  ||| |   | |  || |   || ||  |  | | | | ||| || |   ||    |   |||||| || | ||| ||  || | ||| | |  ||||||||||| || |||||||| ||||| |||||| ||||  | |||||||||||  ||||||| ||||
--------------------------------------------tcttcatgcacaat---ttgtatttaagttcacacgtttctcagtttggtttctatatctttgttgaaagga-actaataatcttatgcgttctgttatggcagCCCCGCAATGTCCGATTGGAGCACAAAACATTGAAGCTTCTGAAGTATTGGACCTGGCAATTTGTTATTGTTAGGCCAGTATGTTCCATTCTGATTATTG

upper sequence: GLYMA13G31920.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0404g00020.t01 (Vitis vinifera), 3'ss of exon 3
gtatggcttgcttctgcagtctgcacactttgagttgtgctaaaattttgggcagaatgaatttgatctactcacaaga-aatttgcagatgtatatgatgttggtgatgtcataatattcacaattttgtaaattgatcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGGACATGGCAGTTTGTTGTTGTCCGTCCAGTATGTTCTGTTCTGATGATTG
                                           | |  |  | |     ||    |  || | | |||| ||  |      ||    ||| | | |      | |||||    |   ||||   |  |    ||||||||||| || || || ||| | |||||||   |||||||||| ||||||||||||||||||||||||||  ||||||| ||||| ||  || |||||||  
------------------------------------------gattcatatgtattccaaaac--acatatttataagacaagctttgtgagttctcgatatggctaga---agaatatctg-acacttgtggttctaaaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGGACATGGCAGTTTGTTGTCATCCGTCCTGTATGCTCCATTTTGATGATAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208110971|gb|GD908731.1|GD908731
EST:     TTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: TTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|298180341|gb|HO025542.1|HO025542
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAAT
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAAT
EST: gi|192293831|gb|FG986040.1|FG986040
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGACTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|192303742|gb|FG996008.1|FG996008
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|193569388|gb|FK527147.1|FK527147
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|298173693|gb|HO017029.1|HO017029
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|193597217|gb|FK554027.1|FK554027
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|254322281|gb|GR837695.1|GR837695
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|192324572|gb|FK016463.1|FK016463
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|193422792|gb|FK388781.1|FK388781
EST:     AATCAAAGGCAGGGAAATTCACCACTCTTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AATCAAAGGCAGGGAAATTCACCACTC-TTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|192303741|gb|FG996007.1|FG996007
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|193520416|gb|FK475047.1|FK475047
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|193400730|gb|FK368357.1|FK368357
EST:     AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAG                         CCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATCAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTTTTTCAGgtatggcttg ... tcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgatgttggtgatgtcataatattcacaattttgtaaattgatcttctgcagCCTCGTACTGTTCGGCTGAACCACCATAATTTGAAGCTTCTAAAATATTGGACATGGCAGTTTGTTGTTGTCCGTCCAGTATGTTCTGTTCTGATGATTG
                                       aattgat  putative branch site (score: 4)
                                             tcttctgc  CT-rich tract
                   ataatattcacaattt  TA-rich tract