1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcatcctttttattaatttatttatttatttatttatttttgggtctatgagtgcaagagattgtattctttatccagctatgattttccttattgatctacagCAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAGTACAAAGTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAA
species | Glycine max |
transcript | GLYMA13G31720.1 |
intron # | 2 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: AGGCTATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAAC CAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAGEST: gi|193384825|gb|FK353183.1|FK353183
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAACgcatcctttt ... tgatctacagCAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAG
EST: AGGCTATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAAC CAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAGEST: gi|298195085|gb|HO043613.1|HO043613
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAACgcatcctttt ... tgatctacagCAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAG
EST: AGGCAATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAAC CAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAGEST: gi|21285801|gb|BQ473672.1|BQ473672
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAACgcatcctttt ... tgatctacagCAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAG
EST: AGGCTATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAAC CAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAGEST: gi|7029731|gb|AW459514.1|AW459514
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAACgcatcctttt ... tgatctacagCAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAG
EST: TCTGGAACTGAAC CAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAGEST: gi|18039280|gb|BM307574.1|BM307574
genomic: TCTGGAACTGAACgcatcctttt ... tgatctacagCAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAG
EST: AGGCTATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAAC CAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAG
genomic: AGGCTATGTTGAAGCTGCTGAGAAATTTCGAATGGAGTCTGGAACTGAACgcatcctttt ... tgatctacagCAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAG
gagtgcaagagattgtattctttatccagctatgattttccttattgatctacagCAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAGTACAAAGTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAA
ttccttatt putative branch site
ttttccttatt putative PPT
attgtattctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatcctttttattaatttatttatttatttatttatttttgggtctatgagtgcaagagattgtattctttatccagctatgattttccttattgatctacagCAGACATAGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAGTACAAAGTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG