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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctttaccccctttcaatccaatttcaacttctcattactcattactcaacttatctttactttattaattaacagATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGG

Basic information

species Glycine max
transcript GLYMA13G30670.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G30670.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv10s0003g00640.t01 (Vitis vinifera), 3'ss of exon 3
---------------------gtctttaccccctttcaatccaatttcaacttctcattactcattactcaacttatctttactttattaattaacagATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGG
                      | |||      |||   |  || || || ||   ||||   |||  | || ||     |  || | |  ||  ||||||||| ||||| ||||| |||||| ||||||||||||| | ||| |||| ||| |||||||| ||                                
gtctcatttctcaacctttttttattttttatttttttctttaaatttaaatttctattatgaatttttgaatttgag--tgattaaat--tttgcagATGTCGGAAGGTGTTGAACATGAGGTTGTTCCCAAATGAGACTACTGGCAGAGCATGGGACCAAAGC-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298199178|gb|HO042541.1|HO042541
EST:     GTCCTCGTCGGAATCCACGACTCTGATTCCGACGCCGACGCCGATTACAT                         ATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAA
genomic: GTCCTCGTCGGAATCCACGACTCTGATTCCGACGCCGACGCCGATTACATgtctttaccc ... taattaacagATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAA
EST: gi|193630144|gb|FK585313.1|FK585313
EST:     GTCCTCGTCGGAATCCACGACTCTGATTCCGACGCCGACGCCGATTACAT                         ATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAA
genomic: GTCCTCGTCGGAATCCACGACTCTGATTCCGACGCCGACGCCGATTACATgtctttaccc ... taattaacagATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAA
EST: gi|193465651|gb|FK433312.1|FK433312
EST:     GTCCTCGTCGGAATCCACGACTCTGATTCCGACGCCGACGCCGATTACAT                         ATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAA
genomic: GTCCTCGTCGGAATCCACGACTCTGATTCCGACGCCGACGCCGATTACATgtctttaccc ... taattaacagATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAA
EST: gi|298182728|gb|HO031463.1|HO031463
EST:     GTCCTCGTCGGAATCCACGACTCTGATTCCGACGCCGACGCCGATTACAT                         ATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAA
genomic: GTCCTCGTCGGAATCCACGACTCTGATTCCGACGCCGACGCCGATTACATgtctttaccc ... taattaacagATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAA
EST: gi|298166730|gb|HO010169.1|HO010169
EST:     GTCCTCGTCGGAATCCACGACTCTGATTCCGACGCCGACGCCGATTACAT                         ATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAA
genomic: GTCCTCGTCGGAATCCACGACTCTGATTCCGACGCCGACGCCGATTACATgtctttaccc ... taattaacagATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcaacttctcattactcattactcaacttatctttactttattaattaacagATGTCGAAAGGTCTTGAATATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTAATGCAGAAAAATTATCAAGTTTTGTTGG
                                          tattaat  putative branch site (score: 2)
                                       ctttatt  CT-rich tract
                         tcaacttatctttact  TA-rich tract