Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctgataacctaatcctaggttcattattcttgctgtctccaccacatgctgatattttgttttctcacttagGCAAAATGTTTGGAAACTGGGGAAGCAGTGGCCATTAAAAAGGTTTTACAAGACAGAAGATACAAGAATCGTGAACTACAGTTAATGCGTGTTTTGGATC

Basic information

species Glycine max
transcript GLYMA13G30060.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G30060.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 3
gtatgctgata--acctaatcctaggttcattattcttgctgtctccaccacatgctgatattttgttttctcactt-----agGCAAAATGTTTGGAAACTGGGGAAGCAGTGGCCATTAAAAAGGTTTTACAAGACAGAAGATACAAGAATCGTGAACTACAGTTAATGCGTGTTTTGGATC
|||    ||||  |  ||  |  |   |   | |   |    | | |   | ||  | || | ||| || ||| |||     |||||||||| ||||||||||| ||  | |||||||| || |||||||| || ||||||||||| ||||||||||| || |||||||||||     ||||||
gtacatggatattaattatgcaaactatttgtgtcaatatcattttctttatat-ttcatgtcttggttcctcgcttctgttagGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTGCAGGACAGAAGATATAAGAATCGTGAGCTGCAGTTAATGCGCACGATGGATC

upper sequence: GLYMA13G30060.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S60_85V6.1 (Physcomitrella patens), 3'ss of exon 4
-------------------------gtatgctgataac-ctaatcctaggttcattattct-tgctgtctccaccacatgctgatattttgttttctcacttagGCAAAATGTTTGGAAACTGGGGAAGCAGTGGCCATTAAAAAGGTTTTACAAGACAGAAGATACAAGAATCGTGAACTACAGTTAATGCGTGTTTTGGATC
                         ||    || | || ||| ||  | | |  |     |   | ||   |     ||  || |    ||| |  |||    |||||||||  | |||||||||||| |||||||||| || ||||| || ||||||| | ||||||||||||||||  | ||| | |||||  | |||||||
tgcattgtagagaagaattttatgggttatttgtttacgctagtctcaagctggtagaagtgcaccgttgtctaagtatcgtggtgacctgtgtgatca----gGCAAAATGCATCGAAACTGGGGAAACAGTGGCCATCAAGAAGGTGTTGCAAGACAAACGATACAAGAATCGTGAGTTGCAGATCATGCGACTGTTGGATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231698|gb|BE800586.1|BE800586
EST:     GGATCATTTGGAATTGTTTTCCAG                         GCAAAATGTTTGGAAACTGGGGAAGCAGTGGCCATTAAAAAGGTTTTACAA
genomic: GGATCATTTGGAATTGTTTTCCAGgtatgctgat ... tctcacttagGCAAAATGTTTGGAAACTGGGGAAGCAGTGGCCATTAAAAAGGTTTTACAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttcattattcttgctgtctccaccacatgctgatattttgttttctcacttagGCAAAATGTTTGGAAACTGGGGAAGCAGTGGCCATTAAAAAGGTTTTACAAGACAGAAGATACAAGAATCGTGAACTACAGTTAATGCGTGTTTTGGATC
                                            ttctcac  putative branch site (score: 2)
                                     ttttgttttctcactt  CT-rich tract
                                tgatattttgtttt  TA-rich tract