1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaataataattcattcacttcaattttaacattcattgtttctgaattatgttatttaacctctagtagtaatggcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
species | Glycine max |
transcript | GLYMA13G29400.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGTCAATGAGGGTGATCCTGAGTTACTTGTCTTCTATTCEST: gi|11690379|gb|BF598055.1|BF598055
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAG-CAATGAGGGTGATCCTGAGTTACTTGTCTTC-ATTC
EST: CTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|207710617|gb|GD691301.1|GD691301
genomic: CTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAAGTTACTTGTACTTAAACAEST: gi|193658986|gb|FK602111.1|FK602111
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGA-GTTACTTGT-CTT---CA
EST: CGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298178150|gb|HO027533.1|HO027533
genomic: CGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298192219|gb|HO036301.1|HO036301
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|193625594|gb|FK574740.1|FK574740
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAAEST: gi|151402759|gb|EV272572.1|EV272572
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAA
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298189706|gb|HO038109.1|HO038109
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCAEST: gi|207734694|gb|GD709257.1|GD709257
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCA
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGGTCCTGAGTTACTTGTCTTCATTCCAEST: gi|298164736|gb|HO014381.1|HO014381
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCA
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|21888807|gb|BQ742020.1|BQ742020
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298180957|gb|HO022396.1|HO022396
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGGTCCTGAGTTACTTGTCTTCATTCCEST: gi|298192873|gb|HO033307.1|HO033307
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGTTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298167595|gb|HO012858.1|HO012858
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|192294103|gb|FG986192.1|FG986192
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|208199957|gb|GD998630.1|GD998630
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGEST: gi|192300261|gb|FG987838.1|FG987838
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGG
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298171596|gb|HO021188.1|HO021188
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCTEST: gi|254315527|gb|GR825336.1|GR825336
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298169227|gb|HO020587.1|HO020587
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGAGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298189728|gb|HO038131.1|HO038131
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298166356|gb|HO008593.1|HO008593
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298175426|gb|HO015059.1|HO015059
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACCTGTCTTCATTCCEST: gi|298179820|gb|HO025035.1|HO025035
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298196871|gb|HO041614.1|HO041614
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298172694|gb|HO019734.1|HO019734
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|20498002|gb|BQ272932.1|BQ272932
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|151393588|gb|EV263463.1|EV263463
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298163228|gb|HO011961.1|HO011961
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCCGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|254342187|gb|GR853324.1|GR853324
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298183628|gb|HO028841.1|HO028841
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|208136560|gb|GD934158.1|GD934158
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAAEST: gi|207807095|gb|GD778018.1|GD778018
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAA
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTACTTAACATTEST: gi|51336638|gb|CO980504.1|CO980504
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGT-CTT--CATT
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|193567750|gb|FK526425.1|FK526425
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: TGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCGTGGG GTTCACTTGGAAAGCAATGAGGGEST: gi|151412116|gb|EV281928.1|EV281928
genomic: TGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTC-TGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGG
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCCEST: gi|298183208|gb|HO028193.1|HO028193
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
EST: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGG GTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
genomic: GTGTTAAGTCAGTTTTCAAAGCTTGGGAAGAGCGTCTGGATTCTTCTGGGgtaataataa ... gcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
cattcattgtttctgaattatgttatttaacctctagtagtaatggcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
atttaac putative branch site (score: 3)
tttctgaattatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataataattcattcacttcaattttaacattcattgtttctgaattatgttatttaacctctagtagtaatggcttcaacagGTTCACTTGGAAAGCAATGAGGGTGATCCTGAGTTACTTGTCTTCATTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA