1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caccccaattgtttttttttgtcacctttaggcttgtgtcttcttttcttttctcgtcattttctactgacttttagatatctctaataactaaatgcagCCCTCATTCTGGTGAATTTAGTGGAGAAAATATTAGACTGGGATCTCGTGGTGACAGTTACTATGAGTACTTAATCAAAGTATGGCTTCAGAGTGGAGCT
species | Glycine max |
transcript | GLYMA13G28910.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACATGAAGACTCTTCCAAAGATTGAAGGACTAGTTCCTATCTACATTAG CCCTCATTCTGGTGAATTTAGTGGAGAAAATATTAGACTGGGATCTCGTGGEST: gi|254314444|gb|GR832029.1|GR832029
genomic: CACATGAAGACTCTTCCAAAGATTGAAGGACTAGTTCCTATCTACATTAGgtatgaaact ... ctaaatgcagCCCTCATTCTGGTGAATTTAGTGGAGAAAATATTAGACTGGGATCTCGTGG
EST: CACATGAAGACTCTTCCAAAGATTGAAGGACTAGTTCCTATCTACATTAG CCCTCATTCTGGTGAATTTAGTGGAGAAAATATTAGACTGGGATCTCGTGGEST: gi|6455624|gb|AW186307.1|AW186307
genomic: CACATGAAGACTCTTCCAAAGATTGAAGGACTAGTTCCTATCTACATTAGgtatgaaact ... ctaaatgcagCCCTCATTCTGGTGAATTTAGTGGAGAAAATATTAGACTGGGATCTCGTGG
EST: AAAGATTGAAGGACTAGTTCCTATCTACATTAG CCCTCATTCTGGTGAATTTAGTGGAGAAAATATTAGACTGGGATCTCGTGG
genomic: AAAGATTGAAGGACTAGTTCCTATCTACATTAGgtatgaaact ... ctaaatgcagCCCTCATTCTGGTGAATTTAGTGGAGAAAATATTAGACTGGGATCTCGTGG
ttcttttctcgtcattttctactgacttttagatatctctaataactaaatgcagCCCTCATTCTGGTGAATTTAGTGGAGAAAATATTAGACTGGGATCTCGTGGTGACAGTTACTATGAGTACTTAATCAAAGTATGGCTTCAGAGTGGAGCT
tctaataactaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccccaattgtttttttttgtcacctttaggcttgtgtcttcttttcttttctcgtcattttctactgacttttagatatctctaataactaaatgcagCCCTCATTCTGGTGAATTTAGTGGAGAAAATATTAGACTGGGATCTCGTGGTGACAGTTACTATGAGTACTTAATCAAAGTATGGCTTCAGAGTGGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
cacccca
- - - - - - - - - -tgtcacc
- - - - - - - - - - - - - - - -gcttgtg