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...tttatggcatataaattgcttttgtttaggaacacctctgttcttacttattaaaaatctattagtttcagagtttttcatcttccattttatttttcagTTTTGCAGAACTATATCCACCAAATATGTTCAAGCATCAGATATGCGGCCTATTACTGTTTTGGAAGACACTTTAAATTACCTTTTGAGTTTGCTGGAAT
species | Glycine max |
transcript | GLYMA13G25740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCTACATGGAAATCCTGGAAAATCATCCCCAGCTCTTGCTGTCAAGAAG TTTTGCAGAACTATATCCACCAAATATGTTCAAGCATCAGATATGCGGCCTEST: gi|213604413|gb|DB970617.1|DB970617
genomic: GGCTACATGGAAATCCTGGAAAATCATCCCCAGCTCTTGCTGTCAAGAAGgtatggccaa ... tatttttcagTTTTGCAGAACTATATCCACCAAATATGTTCAAGCATCAGATATGCGGCCT
EST: GGCTACATGGAAATCCTGGAAAATCATCCCCAGCTCTTGCTGTCAAGAAG TTTTGCAGAACTATATCCACCAAATATGTTCAAGCATCAGATATGCGGCCTEST: gi|254324919|gb|GR834344.1|GR834344
genomic: GGCTACATGGAAATCCTGGAAAATCATCCCCAGCTCTTGCTGTCAAGAAGgtatggccaa ... tatttttcagTTTTGCAGAACTATATCCACCAAATATGTTCAAGCATCAGATATGCGGCCT
EST: GGCTACATGGAAATCCTGGAAAATCATCCCCAGCTCTTGCTGTCAAGAAG TTTTGCAGAACTATATCCACCAAATATGTTCAAGCATCAGATATGCGGCCTEST: gi|298189495|gb|HO037898.1|HO037898
genomic: GGCTACATGGAAATCCTGGAAAATCATCCCCAGCTCTTGCTGTCAAGAAGgtatggccaa ... tatttttcagTTTTGCAGAACTATATCCACCAAATATGTTCAAGCATCAGATATGCGGCCT
EST: GCTACATGGAAATCCTGGAAAATCATCCCCAGCTCTTGCTGGTCAAGAAG TTTTGCAGAACTATATCCACCAAATATGTCCAAGCATCAGATATGCGGCCEST: gi|298177932|gb|HO023781.1|HO023781
genomic: GCTACATGGAAATCCTGGAAAATCATCCCCAGCTCTTGCTG-TCAAGAAGgtatggccaa ... tatttttcagTTTTGCAGAACTATATCCACCAAATATGTTCAAGCATCAGATATGCGGCC
EST: GCTACATGGAAATCCTGGAAAATCATCCCCAGCTCTTGCTGGTCAAGAAG TTTTGCAGAACTATATCCACCAAATATGTTCAAGCATCAGATATGCGGCCEST: gi|193535726|gb|FK493530.1|FK493530
genomic: GCTACATGGAAATCCTGGAAAATCATCCCCAGCTCTTGCTG-TCAAGAAGgtatggccaa ... tatttttcagTTTTGCAGAACTATATCCACCAAATATGTTCAAGCATCAGATATGCGGCC
EST: GGCTACATGGAAATCCTGGAAAATCATCCCCAGCTCTTGCTGTCAAGAAG TTTTGCAGAACTATATCCACCAAATATGTTCAAGCATCAGATATGCGGCC
genomic: GGCTACATGGAAATCCTGGAAAATCATCCCCAGCTCTTGCTGTCAAGAAGgtatggccaa ... tatttttcagTTTTGCAGAACTATATCCACCAAATATGTTCAAGCATCAGATATGCGGCC
acttattaaaaatctattagtttcagagtttttcatcttccattttatttttcagTTTTGCAGAACTATATCCACCAAATATGTTCAAGCATCAGATATGCGGCCTATTACTGTTTTGGAAGACACTTTAAATTACCTTTTGAGTTTGCTGGAAT
ttcttac putative branch site (score: 2)
tttttcatcttccatt putative PPT
ttaaaaatctattagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatggcatataaattgcttttgtttaggaacacctctgttcttacttattaaaaatctattagtttcagagtttttcatcttccattttatttttcagTTTTGCAGAACTATATCCACCAAATATGTTCAAGCATCAGATATGCGGCCTATTACTGTTTTGGAAGACACTTTAAATTACCTTTTGAGTTTGCTGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - gcatata
- - - - - - - - -gcttttg
- - - - - - - - - - - - - - - - cacctct
- - - - - - - - - - - - - - - - - - - - - - - - -attaaaaa