Sequence
atgc intronic sequence ATGC exonic sequencegtatgtagccaaatttggcttgatattaagtatggaattagtcttatcctaaattaactggttgatttgtggttggcagCATGGGGGAGATGTAAATGCAACGGATCATACTGGCCAGACAGCCTTACATTGGAGTGCGGTTCGGGGTGCTATTCAGGTTGCGGAACTTTTACTCCAGG
Basic information
species | Glycine max |
transcript | GLYMA13G23230.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G23230.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G20350.1 (Arabidopsis thaliana), 3'ss of exon 1
--------------------------gtatgtagccaaatttggcttgatattaagtatggaattagtcttatcctaaattaa--ctggttgatttgtggttgg--cagCATGGGGGAGATGTAAATGCAACGGATCATACTGGCCAGACAGCCTTACATTGGAGTGCGGTTCGGGGTGCTATTCAGGTTGCGGAACTTTTACTCCAGG
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gttttgtgtcattttacgaattgtttgttgattgctaaattagatttga-actag---tggttttcaagtt-tctaaaactgatccttctcgatttctggtttttccagCATGGTGGAGATGTAAACGCGACGGATCATACTGGACAGACTGCATTGCATTGGAGTGCTGTTCGTGGTGCGATACAAGTTGCAGAACTGTTATTACAAG
upper sequence: GLYMA13G23230.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 1
------------------gtatgtagccaaatttggcttgatattaagtatg-gaattagtcttatcctaaat---taactggttgatttgtggttggcagCATGGGGGAGATGTAAATGCAACGGATCATACTGGCCAGACAGCCTTACATTGGAGTGCGGTTCGGGGTGCTATTCAGGTTGCGGAACTTTTACTCCAGG
|| | | ||| | || || ||| | |||| || | | | ||| | | || || | | || |||||||| ||||||||||||||| ||||| ||||| |||||||| | || ||| |||| || |||||||| || |||||||| || || |||||||| |
tatttcattttttttttctcatttcattgagattgattgcat-ttgagtgggcaaattggtgtgttaattaatggcttattgtttctgtcctatatgacagCATGGAGGAGATGTAAATGCAGTAGATCACACTGGGCAGACAGCACTTCACTGGTGTGCTGTGCGGGGTGCAATCCAGGTTGCAGAGCTATTACTCCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attaagtatggaattagtcttatcctaaattaactggttgatttgtggttggcagCATGGGGGAGATGTAAATGCAACGGATCATACTGGCCAGACAGCCTTACATTGGAGTGCGGTTCGGGGTGCTATTCAGGTTGCGGAACTTTTACTCCAGG
ttatcctaaattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtagccaaatttggcttgatattaagtatggaattagtcttatcctaaattaactggttgatttgtggttggcagCATGGGGGAGATGTAAATGCAACGGATCATACTGGCCAGACAGCCTTACATTGGAGTGCGGTTCGGGGTGCTATTCAGGTTGCGGAACTTTTACTCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG