Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacaatatgtttctcgttgagttttgggttgatgtatcgtttcatttgaaactggatgttctgtttactatgatgcaatcatattataagttatgaggggttttgtttgttatttgttatgatactgatatgaggggttttgtttgttgaaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCGTCAAAGCTCACGTGGACTGCAATGTACCGAAAGCAGCATAAGA

Basic information

species Glycine max
transcript GLYMA13G21520.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G21520.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g40820.3 (Oryza sativa), 3'ss of exon 3
gtgacaatatgtttctcgttgagttttgggttgatgtatcgtttcatttgaaactggatgttctgtttactatgatgcaatcatattataagttatgaggggttttgtttgttatttgttatgatactgatatgaggggttttgtttgttgaaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCGTCAAAGCTCACGTGGACTGCAATGTACCGAAAGCAGCATAAGA
                                                           ||   | |    ||      ||    |||     | | |||   ||| | || |      ||  |   || | | |  |  || || | |||     ||||||| ||||| ||||| ||||||||||| ||| | || ||||||||| |  |||||||  ||||||| || ||||| || |||||| | |||||||| ||||
-----------------------------------------------------------gtcaggctgttcatcgaatgattgctttaa----tgtcaggatatttctctgct------tagaaggttgttgtaaacgtattggtatattg-----tacagGTCTTCCTTTTTGCAAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAGA

upper sequence: GLYMA13G21520.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G110328_T04 (Zea mays), 3'ss of exon 3
gtgacaatatgtttctcgttgagttttgggttgatgtatcgtttcatttgaaactggatgttctgtttactatgatgcaatcatattataagttatgaggggttttgtttgttatttgttatgatactgatatgaggggttttgtttgttgaaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCGTCAAAGCTCACGTGGACTGCAATGTACCGAAAGCAGCATAAGA
                                                                  ||||||    || |||||||| |    | | || | | |      ||||    | |  |  ||  |  ||    |   | ||||     ||| |||||||||| ||||| ||||||||||| ||| | || ||||||||| |  |||||||  ||||||| || ||||| ||||||||| | |||||||| ||||
-----------------------------------------------------------------gttacta----gctatcatatttt----tgtaagagatgtctaagattataaaatcttcttatggaa--agaaactacatatgtt-----ttatagGTTTTCCTTTTTGCCAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA

upper sequence: GLYMA13G21520.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgacaatatgtttctcgttgagttttgggttgatgtatcgtttcatttgaaactggatgttctgtttactatgatgcaatcatattataagttatgaggggttttgtttgttatttgttatgatactgatatgaggggttttgtttgttgaa--acttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCGTCAAAGCTCACGTGGACTGCAATGTACCGAAAGCAGCATAAGA
                                                      ||| | || | |  |   | |   ||||| |||              | ||||||| |  ||||  |   |  || | | ||   |||  |   ||| |    || ||||||||| |||||  ||||||||||||||||||||| ||||| |||| ||||||||| || |||||  | |||||||| |||||| ||||||| || ||||
----------------------------------------------------gttggttcttttatgaatcttcagctaatcaaatt--------------gatttgtttatactttgcaaatgttttggttttagtcttttaatggtttgtattgttttcagGTTTTCTTGTTTCTTAACTCAAAATGTAAGAGGTACTTCCATAACAAGTTGAAGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGA

upper sequence: GLYMA13G21520.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G36620.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgacaatatgtttctcgttgagttttgggttgatgtatcgtttcatttgaaactggatgttctgtttactatgatgcaatcatattataagttatgaggggttttgtttgttatttgttatgatactgatatgaggggttttgtttgttgaaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCGTCAAAGCTCACGTGGACTGCAATGTACCGAAAGCAGCATAAGA
                                  |   |  |||   || ||  ||  || |||  ||  || || | | || |||     ||||  | |            ||| |||  ||||      ||    ||||||  | |||| |      |||| ||  |||||   ||||| ||||||||||||||||||||||||| ||||||||| || |||||    |||||||| ||||||||||||||||| ||||
---------------------------------gtactttattttggttaaa--tgtgtgctctacttgttaagaag-agtcttatctgttgttactatg------------tatctgtattgattaaatcatctttggtttttatggttgtat----tagGTGTTTTTGTTTCTCAACTCCAAATGTAAGAGGTATTTCCACAACAAGTTGAAGCCATCTAAGCTTTGCTGGACTGCTATGTACCGAAAGCAGCACAAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23057424|gb|BU578098.1|BU578098
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209720831|gb|BW659525.1|BW659525
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|151411427|gb|EV281238.1|EV281238
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|13790867|gb|BG653458.1|BG653458
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|33388019|gb|CA851226.1|CA851226
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|120529878|gb|EH258012.1|EH258012
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|19053213|gb|BM731880.1|BM731880
EST:     GATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: GATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|192329410|gb|FK023628.1|FK023628
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|254316158|gb|GR825967.1|GR825967
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|13787312|gb|BG649904.1|BG649904
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|120531053|gb|EH259186.1|EH259186
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|9203781|gb|BE330005.1|BE330005
EST:     CCAAAATCTACCCACGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|213618473|gb|DB967710.1|DB967710
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|4397362|gb|AI496359.1|AI496359
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|298185626|gb|HO030839.1|HO030839
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|254341112|gb|GR854840.1|GR854840
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|17021663|gb|BM092697.1|BM092697
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|57575853|gb|CX548824.1|CX548824
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|7926002|gb|AW832028.1|AW832028
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|6725370|gb|AW309769.1|AW309769
EST:     CCAAGATCTACCCAGGAAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209722711|gb|BW657965.1|BW657965
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|213619695|gb|DB967317.1|DB967317
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|207680957|gb|GD664084.1|GD664084
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCA
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCA
EST: gi|209705938|gb|BW661755.1|BW661755
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|151398218|gb|EV268096.1|EV268096
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|6566752|gb|AW234384.1|AW234384
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|7145806|gb|AW507728.1|AW507728
EST:     CCCAGATATACCCACGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|192306402|gb|FG997156.1|FG997156
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|192325754|gb|FK017976.1|FK017976
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|31456728|gb|CD398756.1|CD398756
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|31476383|gb|CD418411.1|CD418411
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|163926101|gb|EH038392.1|EH038392
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|57574256|gb|CX547231.1|CX547231
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|57574098|gb|CX547073.1|CX547073
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|18040154|gb|BM308448.1|BM308448
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|213599777|gb|DB968427.1|DB968427
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|192324210|gb|FK017941.1|FK017941
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|33388095|gb|CA851302.1|CA851302
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209715513|gb|BW682179.1|BW682179
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|17518736|gb|BM187778.1|BM187778
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|4396821|gb|AI495818.1|AI495818
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|5606228|gb|AI900326.1|AI900326
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|151397032|gb|EV266905.1|EV266905
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|12496182|gb|BG046936.1|BG046936
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209702723|gb|BW652766.1|BW652766
EST:     CAAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|58022509|gb|CX709250.1|CX709250
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|7041987|gb|AW471881.1|AW471881
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|58025291|gb|CX712032.1|CX712032
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|10848042|gb|BF070603.1|BF070603
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|31473123|gb|CD415151.1|CD415151
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|192307537|gb|FK000823.1|FK000823
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|12688076|gb|BG154412.1|BG154412
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTAT
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTAT
EST: gi|4313982|gb|AI461101.1|AI461101
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|298164889|gb|HO010886.1|HO010886
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|19054246|gb|BM732913.1|BM732913
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|192298391|gb|FG989142.1|FG989142
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209723192|gb|BW675138.1|BW675138
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|6482694|gb|AW201931.1|AW201931
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|16347827|gb|BI973422.1|BI973422
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|15664207|gb|BI701578.1|BI701578
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|213607190|gb|DB965104.1|DB965104
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|193529014|gb|FK486042.1|FK486042
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|58022219|gb|CX708960.1|CX708960
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209720832|gb|BW659526.1|BW659526
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|298165579|gb|HO011628.1|HO011628
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|20814420|gb|BQ298898.1|BQ298898
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209705937|gb|BW661754.1|BW661754
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|10846233|gb|BF069176.1|BF069176
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacaatat ... aaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgttatttgttatgatactgatatgaggggttttgtttgttgaaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCGTCAAAGCTCACGTGGACTGCAATGTACCGAAAGCAGCATAAGA
                  tactgat  putative branch site (score: 2)
     ttatttgttatgata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgacaatatgtttctcgttgagttttgggttgatgtatcgtttcatttgaaactggatgttctgtttactatgatgcaatcatattataagttatgaggggttttgtttgttatttgttatgatactgatatgaggggttttgtttgttgaaacttacagGTTTTCCTGTTTGCTAACTCAAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCGTCAAAGCTCACGTGGACTGCAATGTACCGAAAGCAGCATAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA