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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcctccttgacattcatggcttgacctatttaactttttgtctggtcatatctgtctaactgtgttttattgccataacaagTGGTTCAGCTTCTGTTGGGGAAGATCACTTTTTTTCCATCTGGAGGGATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTATTCCCATAGGT

Basic information

species Glycine max
transcript GLYMA13G21480.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G21480.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 2
gtgagcctccttgacattcatggcttgacctatttaactttttgtctggtcatatctgtctaactgtgtttt-attgccataacaagTGGTTCAGCTTCTGTTGGGGAAGATCACTTTTTTTCCATCTGGAGGGATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTATTCCCATAGGT
|||||  ||  | | ||   || | | |       ||   ||       ||||   | | |||   |||||| |||||||| ||||| ||| |||||||   ||| |||||| ||||| ||||||||||| |||| |||||| ||||||  || ||||| ||||||||| ||||  |||| || |||
gtgagt-tctctaaaatctttgtcataa-------aatccttgaaggaatcatgattttgtaatcatgtttttattgccatcacaagGGGTGCAGCTTCCACTGGAGAAGATGACTTTGTTTCCATCTGGCGGGAGTGCAGTGATGATCAAAAGGATTGTTTAGGATCTATTGTGGTTCCGATTGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254346793|gb|GR856515.1|GR856515
EST:     ACAACAGATGTTGTAGATAAACTTTCCAAGCTGGTTTGCAACCGTATGGG                         TGGTTCAGCTTCTGTTGGGGAAGATCACNNNNNNNCCATCTGGAGGGATTG
genomic: ACAACAGATGTTGTAGATAAACTTTCCAAGCTGGTTTGCAACCGTATGGGgtgagcctcc ... ccataacaagTGGTTCAGCTTCTGTTGGGGAAGATCACTTTTTTTCCATCTGGAGGGATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaactttttgtctggtcatatctgtctaactgtgttttattgccataacaagTGGTTCAGCTTCTGTTGGGGAAGATCACTTTTTTTCCATCTGGAGGGATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTATTCCCATAGGT
                          gtctaac  putative branch site (score: 2)
                                   tgttttatt  TA-rich tract