1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaataaaaactcgaatctttagctgctagttcatgaattggaccatttttaagtttctggcatcatgtggattgaatgcaaacaaatataatgaaatatttcttatagggtctttctgttcaatcactttccattgaccaaaatggttgattgaagtggaattaataacattacatctatattgcagCTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCACAGGGAATTATTCTTG
species | Glycine max |
transcript | GLYMA13G20970.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGCTCACAGTAGGTGGGAAGAGATTGAAACTAACTATTTGGGACACTG CTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCACEST: gi|298176712|gb|HO026833.1|HO026833
genomic: GATGCTCACAGTAGGTGGGAAGAGATTGAAACTAACTATTTGGGACACTGgtaataaaaa ... tatattgcagCTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCAC
EST: GATGCTCACAGTAGGTGGGAAGAGATTGAAACTAACTATTTGGGACACTG CTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCACEST: gi|192328230|gb|FK022894.1|FK022894
genomic: GATGCTCACAGTAGGTGGGAAGAGATTGAAACTAACTATTTGGGACACTGgtaataaaaa ... tatattgcagCTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCAC
EST: GATGCTCACAGTAGGTGGGAAGAGATTGAAACTAACTATTTGGGACACTG CTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCACEST: gi|15201651|gb|BI424985.1|BI424985
genomic: GATGCTCACAGTAGGTGGGAAGAGATTGAAACTAACTATTTGGGACACTGgtaataaaaa ... tatattgcagCTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCAC
EST: ATTGAAACTAACTATTTGGGACACTG CTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCACEST: gi|192303747|gb|FG998673.1|FG998673
genomic: ATTGAAACTAACTATTTGGGACACTGgtaataaaaa ... tatattgcagCTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCAC
EST: GATGCTCACAGTAGGTGGGAAGAGATTGAAACTAACTATTTGGGACACTG CTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCACEST: gi|13563363|gb|BG551583.1|BG551583
genomic: GATGCTCACAGTAGGTGGGAAGAGATTGAAACTAACTATTTGGGACACTGgtaataaaaa ... tatattgcagCTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCAC
EST: GATGCTCACAGTAGGTGGGAAGAGATTGAAACTAACTATTTGGGACACTG CTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCACEST: gi|58018762|gb|CX705504.1|CX705504
genomic: GATGCTCACAGTAGGTGGGAAGAGATTGAAACTAACTATTTGGGACACTGgtaataaaaa ... tatattgcagCTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCAC
EST: ACAGTAGGTGGGAAGAGATTGAAACTAACTATTTGGGACACTG CTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCAC
genomic: ACAGTAGGTGGGAAGAGATTGAAACTAACTATTTGGGACACTGgtaataaaaa ... tatattgcagCTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCAC
attgaccaaaatggttgattgaagtggaattaataacattacatctatattgcagCTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCACAGGGAATTATTCTTG
taataac putative branch site (score: 1)
aattaataacattaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaaaactcgaatctttagctgctagttcatgaattggaccatttttaagtttctggcatcatgtggattgaatgcaaacaaatataatgaaatatttcttatagggtctttctgttcaatcactttccattgaccaaaatggttgattgaagtggaattaataacattacatctatattgcagCTGGGCAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCACAGGGAATTATTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA