1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaatttcacaacaatttatgcacgtactatcatctgaattctgatcaatataatttgtttagcatttttgggtttcagGTTGTGAGAGGTGTAGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTTTAAGGGTAGCTGAGTATGCTTTTCACTATGCCAAGGCTCATGGAAGAG
species | Glycine max |
transcript | GLYMA13G20790.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTAGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTEST: gi|254321136|gb|GR827585.1|GR827585
genomic: TCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtttcagGTTGTGAGAGGTGTAGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTAGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTEST: gi|24135690|gb|BU926200.1|BU926200
genomic: TCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtttcagGTTGTGAGAGGTGTAGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTAGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTEST: gi|19348449|gb|BM892981.1|BM892981
genomic: TCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtttcagGTTGTGAGAGGTGTAGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAN GTTGTGAGAGGTGTAEST: gi|209702312|gb|BW667500.1|BW667500
genomic: TCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtttcagGTTGTGAGAGGTGTA
EST: TCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTAGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTEST: gi|298197822|gb|HO039361.1|HO039361
genomic: TCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtttcagGTTGTGAGAGGTGTAGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGT
EST: TCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTAGTEST: gi|193453771|gb|FK421143.1|FK421143
genomic: TCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtttcagGTTGTGAGAGGTGTAGT
EST: TCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAG GTTGTGAGAGGTGTAGTAGAAAGTCTCAAAATCATTACACGT
genomic: TCACAATTCGTGAAAATACGGAAGGCGAGTACAGTGGACTTGAACATCAGgtaaatttca ... tgggtttcagGTTGTGAGAGGTGTAGTAGAAAGTCTCAAAATCATTACACGT
gtactatcatctgaattctgatcaatataatttgtttagcatttttgggtttcagGTTGTGAGAGGTGTAGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTTTAAGGGTAGCTGAGTATGCTTTTCACTATGCCAAGGCTCATGGAAGAG
ttctgat putative branch site (score: 3)
cattttt putative PPT
aatataatttgtttag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttcacaacaatttatgcacgtactatcatctgaattctgatcaatataatttgtttagcatttttgggtttcagGTTGTGAGAGGTGTAGTAGAAAGTCTCAAAATCATTACACGTCAAGCAAGTTTAAGGGTAGCTGAGTATGCTTTTCACTATGCCAAGGCTCATGGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA