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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctactcttgatgttaatttttctccattgttaattttctaagcttcatcactaaaactgaatttgcagATATAGTTACCAGATACCACAGGGAGAAACAAATCATACTTGTGGCGGTGCTGATATTTGGTCTGGTGTGGTGAACAATAGTGATATCTTTTGTTCTCCA

Basic information

species Glycine max
transcript GLYMA13G20750.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20750.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0040g01620.t01 (Vitis vinifera), 3'ss of exon 5
---------------------------gtaagttctactcttgatgttaatttttctccattgttaattttc--taagcttcatcactaaaactgaatttgcagATATAGTTACCAGATACCACAGGGAGAAACAAATCATACTTGTGGCGGTGCTGATATTTGGTCTGGTGTGGTGAACAATAGTGATATCTTTTGTTCTCCA
                            |    |  | || |||      |||||     |   |  ||| |  |||  || ||   || ||   ||||||||||||  | ||||| |||||||  ||| || |||||||||||||||| || || ||||||||| ||| ||| | ||  |  || ||| | || || ||  ||
gtaagtttccatccttgtggatctcttttttccttcattcctgaaccaggttttttattgtatatgctttgcattaatatttattgttagaaa-aaatttgcagATACGGCTACCAAATACCACCTGGAAAACCAAATCATACTTGTGGTGGAGCAGATATTTGGGCTGATGTTGAGAGTAGCAGAGATGTATTCTGCTCAGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatttttctccattgttaattttctaagcttcatcactaaaactgaatttgcagATATAGTTACCAGATACCACAGGGAGAAACAAATCATACTTGTGGCGGTGCTGATATTTGGTCTGGTGTGGTGAACAATAGTGATATCTTTTGTTCTCCA
                                   cactaaa  putative branch site (score: 2)
            attgttaattttctaa  TA-rich tract