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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcactctaaatttcaaaaatttattctaaatttggaattttgtttcttggaatttttagagggtggtgtgaatgtggaaagaagttaatctggttttcgttgttgcagAGATTTCGTGCTGGATGTGGACAGGTGAACGGCAATCAACGAGGATGAGGATCAGGTATCTTGAGGCAGCGTTGGACCAGGACATTCAATTCTTTGACAC

Basic information

species Glycine max
transcript GLYMA13G20530.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20530.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G36910.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagtttcactctaaatttcaaaaatttattctaaatttggaattttgtttcttggaatttttagagggtggtgtgaatgtggaaagaagttaatctggttttcgttgttgcagAGATTTCGTGCTGGATGTGGACAGGTGAACGGCAATCAACGAGGATGAGGATCAGGTATCTTGAGGCAGCGTTGGACCAGGACATTCAATTCTTTGACAC
                              ||  ||    |  | ||       |  || ||||| |  ||  | |  || ||    |   ||||    | |||||||||||||||||||||||| ||||||||||  || ||  | ||| |||||| ||||||||| | |||| | || ||||| ||| | || |||||||| |||||||| ||
-----------------------------gttagaagaaagttacttaaagatcta-aacttttatactgttctcttgatctgattcggttttaaatatggtttcgttgttgcagAGATTTCGTGTTGGATGTGGAGTGGAGAGAGACAAACAACGAAGATGAGGATTAAGTATTTAGAAGCAGCTTTGAATCAAGACATTCAGTTCTTTGATAC

upper sequence: GLYMA13G20530.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g05060.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtttcactctaaatttcaaaaatttattctaaatttggaattttgtttcttggaatttttagagggtggtgtgaatgtggaaagaagttaatctggttttcgttgttgcagAGATTTCGTGCTGGATGTGGACAGGTGAACGGCAATCAACGAGGATGAGGATCAGGTATCTTGAGGCAGCGTTGGACCAGGACATTCAATTCTTTGACAC
                | || |||   ||  |||  |||||   || ||||     |    | | |     | | ||  |||  |     |||   || |  |||||| || ||||||| ||||| ||||||||||| || ||  ||||||| || | ||||||||||| ||| || || || || ||| ||||||||||||| || ||||||||
-------------gtgagttgaaattctttctctgtatttg---ttctgttctactgtgactatggtcttggttttggttgtata-----gttg--cttgaattcgtt-tttcagAGATATCGTGTTGGATGTGGACCGGAGAGAGGCAATCCACCAAGATGAGGATCAAGTACCTAGAAGCGGCTTTGAACCAGGACATTCAGTTTTTTGACAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttagagggtggtgtgaatgtggaaagaagttaatctggttttcgttgttgcagAGATTTCGTGCTGGATGTGGACAGGTGAACGGCAATCAACGAGGATGAGGATCAGGTATCTTGAGGCAGCGTTGGACCAGGACATTCAATTCTTTGACAC
                             agttaat  putative branch site (score: 4)
                                        ttttcgtt  putative PPT
                            aagttaat  TA-rich tract