1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgaacaatgagaaagagtagagaaataaatccaacttcaccattgtaacttcatagaatgtgcagtttcaaaattaatgaatgattcaatgtatccacagGTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCAGATAGAATCCAAGCAATCCCAGATGGGGCTCCTCCTGTGC
species | Glycine max |
transcript | GLYMA13G20220.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAA GTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTTEST: gi|192310402|gb|FK002282.1|FK002282
genomic: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAGgttttagttc ... gtatccacagGTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTT
EST: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAG GTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTTEST: gi|308222721|gb|HO760631.1|HO760631
genomic: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAGgttttagttc ... gtatccacagGTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTT
EST: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAG GTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTTEST: gi|27424308|gb|CA935828.1|CA935828
genomic: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAGgttttagttc ... gtatccacagGTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTT
EST: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAG GTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTTEST: gi|7639740|gb|AW734056.1|AW734056
genomic: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAGgttttagttc ... gtatccacagGTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTT
EST: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAG GTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTTEST: gi|13790226|gb|BG652817.1|BG652817
genomic: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAGgttttagttc ... gtatccacagGTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTT
EST: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAG GTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTTEST: gi|213591902|gb|DB973439.1|DB973439
genomic: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAGgttttagttc ... gtatccacagGTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTT
EST: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAG GTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTT
genomic: CTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAGgttttagttc ... gtatccacagGTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTT
taacttcatagaatgtgcagtttcaaaattaatgaatgattcaatgtatccacagGTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCAGATAGAATCCAAGCAATCCCAGATGGGGCTCCTCCTGTGC
tttcaaaattaatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaacaatgagaaagagtagagaaataaatccaacttcaccattgtaacttcatagaatgtgcagtttcaaaattaatgaatgattcaatgtatccacagGTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCAGATAGAATCCAAGCAATCCCAGATGGGGCTCCTCCTGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - caatgag
- - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - cttcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatga