Sequence
atgc intronic sequence ATGC exonic sequence...gtctcagtttgaatagttttggatttgattgatcttgaatccctggtttggtattatccaattgtgctttatcttacaaccaccgtcttggtttgtgcagGTGTCTTTGAAGACGGAACGTGAGAAGAAGAAGGAGCTGTACTTTCCACTAAGAAAGTATGCGATCAAAGTTTAG
Basic information
species | Glycine max |
transcript | GLYMA13G19650.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10844155|gb|BF067487.1|BF067487EST: TCCGTCCCAAGAAGACTCGCGCCATTCGCAGACGCCTTACCAAACACCAG GTGTCTTTGAAGACGGAACGTGAGAAGAAGAAGGAGCTGTACTTTCCACTA
genomic: TCCGTCCCAAGAAGACCCGCGCCATTCGCAGACGCCTTACCAAACACCAGgtttcattct ... gtttgtgcagGTGTCTTTGAAGACGGAACGTGAGAAGAAGAAGGAGCTGTACTTTCCACTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttggtattatccaattgtgctttatcttacaaccaccgtcttggtttgtgcagGTGTCTTTGAAGACGGAACGTGAGAAGAAGAAGGAGCTGTACTTTCCACTAAGAAAGTATGCGATCAAAGTTTAG
atcttac putative branch site (score: 3)
tttatctta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctcagtttgaatagttttggatttgattgatcttgaatccctggtttggtattatccaattgtgctttatcttacaaccaccgtcttggtttgtgcagGTGTCTTTGAAGACGGAACGTGAGAAGAAGAAGGAGCTGTACTTTCCACTAAGAAAGTATGCGATCAAAGTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - ggatttg
- - - - - - - - - - - - - - - - - - - - - - ggtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccac