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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctatgtaattgtaaaattgtgacatcttaatgttttgatcgtgatgtatttcttttttcttactttattttgtatgttaactgtattttctccacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT

Basic information

species Glycine max
transcript GLYMA13G19500.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298184004|gb|HO029217.1|HO029217
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|12489759|gb|BG043280.1|BG043280
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|26269126|gb|CA820189.1|CA820189
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|192330021|gb|FK020837.1|FK020837
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|13479768|gb|BG509111.1|BG509111
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|19346407|gb|BM891287.1|BM891287
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|37996937|gb|CF808526.1|CF808526
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|298181507|gb|HO022946.1|HO022946
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|298169347|gb|HO020707.1|HO020707
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|6133848|gb|AW132241.1|AW132241
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCCGAAGCT-CAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGA-CCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|9565429|gb|BE474938.1|BE474938
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|7587913|gb|AW703719.1|AW703719
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|12489693|gb|BG043214.1|BG043214
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAAATCTTC
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTC
EST: gi|8403914|gb|BE059548.1|BE059548
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|192324146|gb|FK017877.1|FK017877
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|213593665|gb|DB971687.1|DB971687
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|4396573|gb|AI495570.1|AI495570
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAA-GATCTTCA
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCA
EST: gi|209719745|gb|BW672120.1|BW672120
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|298178505|gb|HO024240.1|HO024240
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGC
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|209701982|gb|BW664582.1|BW664582
EST:     CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
EST: gi|17154018|gb|BM143951.1|BM143951
EST:     CATTTCCAGGAGACACGTTGCTGCACACTCGTGGCACGATCTTGAGATAG                         GACCCGAAGCTCCAAAGATCTTCAACTGT
genomic: CATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGgtaagctatg ... cacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcttttttcttactttattttgtatgttaactgtattttctccacaatgcagGACCCGAAGCTCCAAAGATCTTCAACTGT
                           tgttaac  putative branch site (score: 2)
                                    tattttctcc  putative PPT
     ttttttcttactttat  TA-rich tract