1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgtgtttatcttttgcttcttctagagctgttttaatagagtttcaacatctcctttttactatctttatcttttggcagtgtttcaatttaaggagtgtttcagcatcttaagactatgccttttgtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAACTGATACAAAAGTACTTGGGAGATGGCCCAAAACTTGTAAGAGAACTTT
species | Glycine max |
transcript | GLYMA13G19280.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|208147045|gb|GD950634.1|GD950634
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|193530643|gb|FK484924.1|FK484924
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|193377834|gb|FK343262.1|FK343262
genomic: GGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|193641984|gb|FK591144.1|FK591144
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|193605786|gb|FK556036.1|FK556036
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: TTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAGCATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|207714704|gb|GD695538.1|GD695538
genomic: TTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|6482368|gb|AW201633.1|AW201633
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|207796262|gb|GD771445.1|GD771445
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGEST: gi|208081262|gb|GD881622.1|GD881622
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTG
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|15664004|gb|BI701375.1|BI701375
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|254325091|gb|GR834516.1|GR834516
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: AACTGGGAAGACATTGC-TGCGAA- GCTGTGGCAAACTCAACATCAGCAACATTC-TGCGTGTTGTTGGTAGTGAAEST: gi|10709031|gb|BF008692.1|BF008692
genomic: AACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGNAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|193663999|gb|FK614235.1|FK614235
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|208170265|gb|GD966588.1|GD966588
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGT-GTGAAEST: gi|6482143|gb|AW201414.1|AW201414
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGTCATTTTATATGGAGAACCTGGAACCTGG-AAGACATTGCTTGCGAAA GCTGNGGCAAACTCCACATCAGCAACATTCEST: gi|193451188|gb|FK420114.1|FK420114
genomic: GGTCATTTTATATGGAGAACCTGGAAC-TGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTC
EST: TTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAGCATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|208237130|gb|GE035138.1|GE035138
genomic: TTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|58017107|gb|CX703849.1|CX703849
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|207730297|gb|GD708753.1|GD708753
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|193350234|gb|FK318232.1|FK318232
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGTCATTTTATATGGAGAACCTGGAACTGGGGAAGACATCGCTTGCGAAG GCTGTGGCAAACTCAACNTCAGCAACATTCTTGCGTGTTGTTGGTAEST: gi|13791396|gb|BG653987.1|BG653987
genomic: GGTCATTTTATATGGAGAACCTGGAACTGGG-AAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|207799473|gb|GD769242.1|GD769242
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: TTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|208043253|gb|GD840545.1|GD840545
genomic: TTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAAEST: gi|193330012|gb|FK297110.1|FK297110
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTAGGCAAACTCAACAEST: gi|17152958|gb|BM142891.1|BM142891
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGT-GGCAAACTCAACA
EST: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAG GCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
genomic: GGGTCATTTTATATGGAGAACCTGGAACTGGGAAGACATTGCTTGCGAAGgtttgtgttt ... gtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAA
gtttcaatttaaggagtgtttcagcatcttaagactatgccttttgtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAACTGATACAAAAGTACTTGGGAGATGGCCCAAAACTTGTAAGAGAACTTT
ccttttgt CT-rich tract
aatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgtttatcttttgcttcttctagagctgttttaatagagtttcaacatctcctttttactatctttatcttttggcagtgtttcaatttaaggagtgtttcagcatcttaagactatgccttttgtgtattcagGCTGTGGCAAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAACTGATACAAAAGTACTTGGGAGATGGCCCAAAACTTGTAAGAGAACTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA