1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tactggtgaaattgttttattaaatttttactttcttatggctttgatttatgcttatctctgtttttattttaattattttgtgtttttttttaaatagTTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACTGAGGAAGGAA
species | Glycine max |
transcript | GLYMA13G17370.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATCACAATCAACCTCTG TTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGEST: gi|193427054|gb|FK397515.1|FK397515
genomic: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATCACAATCAACCTCTGgttagtcttt ... ttttaaatagTTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAG
EST: AATCAACCTCTG TTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGEST: gi|193346230|gb|FK309722.1|FK309722
genomic: AATCAACCTCTGgttagtcttt ... ttttaaatagTTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAG
EST: AATCAACCTCTG TTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGEST: gi|254329165|gb|GR833537.1|GR833537
genomic: AATCAACCTCTGgttagtcttt ... ttttaaatagTTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAG
EST: GTGGAGTAGGATATA-TCGAAGCGCAAGATATCATCACAATCAACCTCTG TTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAG
genomic: GTGGAGTAGGATATATTCGAAGCGCAAGATATCATCACAATCAACCTCTGgttagtcttt ... ttttaaatagTTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAG
gatttatgcttatctctgtttttattttaattattttgtgtttttttttaaatagTTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACTGAGGAAGGAA
ttttaat putative branch site (score: 3)
ttttgtgttttttttt putative PPT
tgtttttattttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactggtgaaattgttttattaaatttttactttcttatggctttgatttatgcttatctctgtttttattttaattattttgtgtttttttttaaatagTTTCAACAGCATTCTTTTACTAAGTTATACAAGGGAGCCATGATAGAAAAGCATAATTTCCTTTCAACAATGACTACTAACAACACTACTGAGGAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
-actggtg
- - - - - - - - - - - - - - - - - - - -ggctttg
- - - - - - - - - - - - - - - - - - - - - - - -tttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtg