1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...taagtgtattcaattctttttgtcccggggttgttaacttacccttttgctttgtatgtttcattttaaatatctaatcactattacggcgtatatgcagTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTTTTTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAG
species | Glycine max |
transcript | GLYMA13G17200.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGT TTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGEST: gi|193620760|gb|FK568484.1|FK568484
genomic: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTgtgagtgtta ... gtatatgcagTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAG
EST: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGT TTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGEST: gi|208232849|gb|GE030376.1|GE030376
genomic: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTgtgagtgtta ... gtatatgcagTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAG
EST: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGT TTATGTTGGCAACATTCATCCCCAGGTTACAGGTTCCCTTCTTCAAGAGCTEST: gi|208035174|gb|GD835518.1|GD835518
genomic: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTgtgagtgtta ... gtatatgcagTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCT
EST: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGT TTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTEST: gi|13252197|gb|BG363100.1|BG363100
genomic: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTgtgagtgtta ... gtatatgcagTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCT
EST: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGT TTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTEST: gi|193328920|gb|FK295164.1|FK295164
genomic: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTgtgagtgtta ... gtatatgcagTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCT
EST: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGT TTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTEST: gi|208052196|gb|GD853481.1|GD853481
genomic: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTgtgagtgtta ... gtatatgcagTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCT
EST: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGT TTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTEST: gi|13789938|gb|BG652529.1|BG652529
genomic: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTgtgagtgtta ... gtatatgcagTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCT
EST: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTTT TTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTEST: gi|19348273|gb|BM892805.1|BM892805
genomic: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTgtgagtgtta ... gtatatgcagTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCT
EST: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGT TTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTEST: gi|207709716|gb|GD692304.1|GD692304
genomic: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTgtgagtgtta ... gtatatgcagTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCT
EST: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGT TTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTEST: gi|42723064|gb|CK768963.1|CK768963
genomic: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTgtgagtgtta ... gtatatgcagTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCT
EST: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGT TTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCT
genomic: TTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTgtgagtgtta ... gtatatgcagTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCT
tttgctttgtatgtttcattttaaatatctaatcactattacggcgtatatgcagTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTTTTTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAG
atctaat putative branch site (score: 3)
tttgtatgtttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagtgtattcaattctttttgtcccggggttgttaacttacccttttgctttgtatgtttcattttaaatatctaatcactattacggcgtatatgcagTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTTTTTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG