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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattttttgtttttgtttttatctttcttctgagcaatctggttttattattactgaaacgttcttgttttgtgtcgaatatgattgcaacaggatgatgttaatgttatctgttaaattttaattaatggccttatcttcttttttttccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAAAATCTTCTCAGGGGAATTTAC

Basic information

species Glycine max
transcript GLYMA13G16570.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G16570.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G13920.3 (Arabidopsis thaliana), 3'ss of exon 2
gtaagattttttgtttttgtttttatctttcttctgagcaatctggttttattattactgaaacgttcttgttttgtgtcgaatatgattgcaacaggatgatgttaatgttatctgttaaattttaattaatggccttatcttcttttttttccctttcagACTTTCATCTGATGGACAGGAC---TTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAAAATCTTCTCAGGGGAATTTAC---
                                                                                        |      |      | ||    || |    |   || |        ||  || || ||  || | |  | |  ||     |  ||| ||||| ||    ||||||||||||||||| || ||| |||| || ||||| || |||||| | || || || ||||||||||| |||||    
---------------------------------------------------------------------------------------gtctttttacttctgttttttcattcttgagtgtgttctctccgcatgctctagctgctaattgtactgtatt-gatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAGCTTTGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCT

upper sequence: GLYMA13G16570.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 2
gtaagattttttgtttttgtttttatctttcttctgagcaatctggttttattattactgaaacgttcttgttttgtgtcgaatatgattgcaacaggatgatgttaatgttatctgttaaattttaattaatggccttatcttcttttttttccctttcagACTTTCATCTGATGGACAGGAC---TTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAAAATCTTCTCAGGGGAATTTAC---
                                                                                || | |  || |  | |     | ||    || |    |   || |        ||  || || ||  || | |  | |  ||     |  ||| ||||| ||    ||||||||||||||||| || ||| |||| || ||||| || |||||| | || || || ||||||||||| |||||    
------------------------------------------------------------------------------gtgagtctttttacttctg-----ttttttcattcttgagtgtgttctctccgcatgctctagctgctaattgtactgtatt-gatacagACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAGCTTTGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCT

upper sequence: GLYMA13G16570.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0016g01920.t01 (Vitis vinifera), 3'ss of exon 1
gtaagattttttgtttttgtttttatctttcttctgagcaatctggttttattattactgaaacgttcttgttttgtgtcgaatatgattgcaacaggatgatgttaatgttatctgttaaattttaattaatggccttatcttcttttttttccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAAAATCTTCTCAGGGGAATTTAC
|||||   |    |  |  ||||| | |  || |       | |    |  |   |  |||||  |||   |||        |  |   || || ||||   || |||| || | |  |   ||||| | ||| |    ||                  ||| |||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||  ||||||||||||| || ||||||||||| || ||||| 
gtaaggaatacactcctcttttttctttccctccctttttttttataatactctgttttgaaaatttcaaatttaaaagtctacctatgtgtaatagga---tgctaattttcttttcttggtttta-tgaatcgatgcata-----------------cagGCTTTCAACTGATGGACAGGATTTCTTCACATCTTATGATGAGGTTTATGATAGTTTTGATTCTATGGGTTTGCAAGAGAATCTTCTCAGAGGCATTTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208120533|gb|GD915638.1|GD915638
EST:     GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT                         ACTTTCATCCGATGGACAGGACTTCTTC
genomic: GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTC
EST: gi|209702283|gb|BW677978.1|BW677978
EST:     GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|213611789|gb|DB958883.1|DB958883
EST:     GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|18848532|gb|BM567716.1|BM567716
EST:     GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|192324821|gb|FK018797.1|FK018797
EST:     GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|213599313|gb|DB962322.1|DB962322
EST:     GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|209702379|gb|BW656354.1|BW656354
EST:     GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|10846840|gb|BF071428.1|BF071428
EST:     GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|213590331|gb|DB970129.1|DB970129
EST:     GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|209710996|gb|BW681346.1|BW681346
EST:     GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|213600814|gb|DB968820.1|DB968820
EST:     GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|16349138|gb|BI974733.1|BI974733
EST:     GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|213607320|gb|DB965150.1|DB965150
EST:     GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
EST: gi|7686567|gb|AW757215.1|AW757215
EST:     GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTT                         ACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA
genomic: GAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTgtaagatttt ... tccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttatctgttaaattttaattaatggccttatcttcttttttttccctttcagACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAAAATCTTCTCAGGGGAATTTAC
                   aattaat  putative branch site (score: 3)
                         tggccttatcttcttt  CT-rich tract
     atctgttaaattttaa  TA-rich tract