1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atattatattgagaatgaatgatatagtattttaatttgtatatgtcctatttgacaatgccagaagctggtttcatatcttccatttgttgttctacagCTCAAAAAACAATATTCCTGTATGGCCATTCCTGATACTTTCATGTTTTGGTGGTGCATATGTTCTTCTTCCATATTTCGTACTTTGGAAACCGCCAGCT
species | Glycine max |
transcript | GLYMA13G11710.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCTTGTGGCCATTGGTATATAGCATGCTCTTGCTTCCAACCGGAAGAAG CTCAAAAAACAATATTCCTGTATGGCCATTCCTGEST: gi|20812781|gb|BQ297259.1|BQ297259
genomic: GGCTTGTGGCCATTGGTATATAGCATGCTCTTGCTTCCAACCGGAAGAAGgtacttccct ... tgttctacagCTCAAAAAACAATATTCCTGTATGGCCATTCCTG
EST: GGCTTGTGGCCATTGGTATATAGCATGCTCTTGCTTCCAACCGGAAGAAG CTCAAAAAACAATATTCCTGTATGGCCATTCCTGEST: gi|10238065|gb|BE806953.1|BE806953
genomic: GGCTTGTGGCCATTGGTATATAGCATGCTCTTGCTTCCAACCGGAAGAAGgtacttccct ... tgttctacagCTCAAAAAACAATATTCCTGTATGGCCATTCCTG
EST: GGCTTGTGGCCATTGGTATATAGCATGCTCTTGCTTCCAACCGGAAGAAG CTCAAAAAACAATATTCCTGTATGGCCATTCCTGATACTTTCATGTTTTGGEST: gi|7691864|gb|AW759983.1|AW759983
genomic: GGCTTGTGGCCATTGGTATATAGCATGCTCTTGCTTCCAACCGGAAGAAGgtacttccct ... tgttctacagCTCAAAAAACAATATTCCTGTATGGCCATTCCTGATACTTTCATGTTTTGG
EST: GGCTTGTGGCCATTGGTATATAGCATGCTCTTGCTTCCAACCGGAAGAAG CTCAAAAGACAATATTCCTGTATGGCCATTCCTG
genomic: GGCTTGTGGCCATTGGTATATAGCATGCTCTTGCTTCCAACCGGAAGAAGgtacttccct ... tgttctacagCTCAAAAAACAATATTCCTGTATGGCCATTCCTG
tcctatttgacaatgccagaagctggtttcatatcttccatttgttgttctacagCTCAAAAAACAATATTCCTGTATGGCCATTCCTGATACTTTCATGTTTTGGTGGTGCATATGTTCTTCTTCCATATTTCGTACTTTGGAAACCGCCAGCT
atttgac putative branch site (score: 4)
ttgttct putative PPT
tttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattatattgagaatgaatgatatagtattttaatttgtatatgtcctatttgacaatgccagaagctggtttcatatcttccatttgttgttctacagCTCAAAAAACAATATTCCTGTATGGCCATTCCTGATACTTTCATGTTTTGGTGGTGCATATGTTCTTCTTCCATATTTCGTACTTTGGAAACCGCCAGCT
- - - - - - - -tgaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagctg