1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acaaatcatgttttggcctaaggtgcgagggaaattgatgttttgaatggatgaaaagtgactttttttatttaatctttatgttggtgtggttattcagGTGGATCTTAAGTTCAAAATATGCCGGGGTTCATCAGTGAGGAGAATTTTGGTTCGAGAAGCGAATGCTTATTCTGCAACACACATCATAGTTGGAAGTT
species | Glycine max |
transcript | GLYMA13G09620.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATTTGACTCTATTCTTGCCGTTTATGAAGGATTCTGCAATTTGAAACAG GTGGATCTTAAGTTCAAAATATGCCGGGGTTCATCAGTGAGGAGAGTTTTGEST: gi|209722125|gb|BW672374.1|BW672374
genomic: CATTTGACTCTATTCTTGCCGTTTATGAAGGATTCTGCAATTTGAAACAGgttgtgtttc ... ggttattcagGTGGATCTTAAGTTCAAAATATGCCGGGGTTCATCAGTGAGGAGAATTTTG
EST: CATTTGACTCTATTCTTGCCGTTTATGAAGGATTCTGCAATTTGAAACAG GTGGATCTTAAGTTCAAAATATGCCGGGGTTCATCAGTGAGGAGAATTTTGEST: gi|208064525|gb|GD862483.1|GD862483
genomic: CATTTGACTCTATTCTTGCCGTTTATGAAGGATTCTGCAATTTGAAACAGgttgtgtttc ... ggttattcagGTGGATCTTAAGTTCAAAATATGCCGGGGTTCATCAGTGAGGAGAATTTTG
EST: CATTTGACTCTATTCTTGCCGTTTATGAAGGATTCTGCAATTTGAAACAG GTGGATCTTAAGTTCAAAATATGCCGGGGTTCATCAGTGAGGAGAATTTTGEST: gi|209714647|gb|BW671567.1|BW671567
genomic: CATTTGACTCTATTCTTGCCGTTTATGAAGGATTCTGCAATTTGAAACAGgttgtgtttc ... ggttattcagGTGGATCTTAAGTTCAAAATATGCCGGGGTTCATCAGTGAGGAGAATTTTG
EST: CATTTGACTCTATTCTTGCCGTTTATGAAGGATTCTGCAATTTGAAACAG GTGGATCTTAAGTTCAAAATATGCCGGGGTTCATCAGTGAGG
genomic: CATTTGACTCTATTCTTGCCGTTTATGAAGGATTCTGCAATTTGAAACAGgttgtgtttc ... ggttattcagGTGGATCTTAAGTTCAAAATATGCCGGGGTTCATCAGTGAGG
aatggatgaaaagtgactttttttatttaatctttatgttggtgtggttattcagGTGGATCTTAAGTTCAAAATATGCCGGGGTTCATCAGTGAGGAGAATTTTGGTTCGAGAAGCGAATGCTTATTCTGCAACACACATCATAGTTGGAAGTT
atttaat putative branch site (score: 4)
aaaagtgacttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaatcatgttttggcctaaggtgcgagggaaattgatgttttgaatggatgaaaagtgactttttttatttaatctttatgttggtgtggttattcagGTGGATCTTAAGTTCAAAATATGCCGGGGTTCATCAGTGAGGAGAATTTTGGTTCGAGAAGCGAATGCTTATTCTGCAACACACATCATAGTTGGAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - -tcatgtt
- - - - tgttttg
- - - - - - - - - - - - gcgaggg
- - - - - - - - - - - - - - - - - - - - - - - -tggatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtg