Sequence
atgc intronic sequence ATGC exonic sequence...ttggatatgaatggattaattgttgctgtgtttgttgctattctttggaatgagtaatagttatactgagattaagaaatcatggtgatatcgtttgcagCACAATCTCCGGCTTGTATTGTTCGTGATCAACAAATATTTTCAAGATTTTGCAAGTGGCCCGAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGAC
Basic information
species | Glycine max |
transcript | GLYMA13G08390.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G08390.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G24120.1 (Arabidopsis thaliana), 3'ss of exon 3
ttggatatg--aatggattaat--tgttgc-tgtgtttgtt---gctattctttggaatgagtaatagttatactgagattaagaaatcatggtgatatcgtttgcagCACAATCTCCGGCTTGTATTGTTCGTGATCAACAAATATTTTCAAGATTTTGCAAGTGGCCCGAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGAC
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gtgagtgtgtcaaaagatttgtaccattacatttgcttataaaggctatttgttatggtgataactctttgaacttattgtgtgtgttttttccttctatgtt-gcagCACAATCTCCGGCTTGTCTTGTTTGTTATGAACAAATACTTTCATGAGTTTACCAACGGACCAAAATTCCAAGACCTTTGTCAAGCGGGTATGAGAGGGC
upper sequence: GLYMA13G08390.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv16s0050g02520.t01 (Vitis vinifera), 3'ss of exon 3
--ttggatatgaatggattaattgttgctgtgtttgttgcta--ttctttgga-atgagtaatagttatactgagattaagaaatcatggtgatatcgtttgcagCACAATCTCCGGCTTGTATTGTTCGTGATCAACAAATATTTTCAAGATTTTGCAAGTGGCCCGAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGAC
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aatcgaaatttatttcagattttcataccattttctctcctgagttctttaggcatgtattat-gtgaaatgaatattaacagatcatgctgttga----tgcagCACAATCTTCGACTGGTTTTGTTTGTAATCAACAAGTACTTTCAAGAGTTTGCCAATGGCCCAAAGTTTCAAGACCTGTGTCAAGCAGGAGTGAAGGGCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207847719|gb|GD818716.1|GD818716EST: TAAGGAAAGCTATAGAGGTTGGTCGAGCTGCGAGAAACAAACTCATAAAG CACAATCTCCGGCTTGTATT
genomic: TAAGGAAAGCTATAGAGGTTGGTCGAGCTGCGAGAAACAAACTCATAAAGgtatcatgga ... tcgtttgcagCACAATCTCCGGCTTGTATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggaatgagtaatagttatactgagattaagaaatcatggtgatatcgtttgcagCACAATCTCCGGCTTGTATTGTTCGTGATCAACAAATATTTTCAAGATTTTGCAAGTGGCCCGAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGAC
taatagttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttggatatgaatggattaattgttgctgtgtttgttgctattctttggaatgagtaatagttatactgagattaagaaatcatggtgatatcgtttgcagCACAATCTCCGGCTTGTATTGTTCGTGATCAACAAATATTTTCAAGATTTTGCAAGTGGCCCGAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGAC
- - - -tgaatgg
- - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - -gaatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catggtg