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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctatggtttttaaattttgcgtgtttgatactggtaagtagcaaatggttaaatattcttacaagttgtaatgtttttattcactccaatttgttgcagTTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATAAGACTATATGAGGTTGTAGAAACCCCAACAGACATATATGTTGTTATGGA

Basic information

species Glycine max
transcript GLYMA13G05700.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G05700.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0108g01230.t01 (Vitis vinifera), 3'ss of exon 2
gctatggtttt-taaattttgcgtg--tttgatactggtaagt--agcaaatggttaaatattcttacaagttgtaatgtttttattcactccaatttgttgcagTTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATAAGACTATATGAGGTTGTAGAAACCCCAACAGACATATATGTTGTTATGGA
   | | |||  |||   ||   ||  |||  |  | || | |  | |  | ||||  | |||   | || || | |    || |     |   ||||  |||||| ||||||||||||||||| || |||||||| ||||| | |||||| ||  |||| ||||||||| |||| || || |  || || | ||| || |||||
--caggatttaataaggattagctgactttagttttagtgactttaccttagggtttga-atttggataa-ttatcagagattcacatgattggattt-ctgcagTGAGAAGAGAAATCAAAATATTGAGATTGTTCATGCACCCTCACATCATTCGACTTTATGAGGTTATAGAGACACCCAGTGATATTTTTGTCGTGATGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208049326|gb|GD847963.1|GD847963
EST:     GATTAAAAACATGGAAATGGAAGAAAAAG                         TTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATAA
genomic: GATTAAAAACATGGAAATGGAAGAAAAAGgtctgaatca ... tttgttgcagTTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATAA
EST: gi|213619572|gb|DB963738.1|DB963738
EST:     AAAGATCCTTAACCGCCACAAGATTAAAAACATGGAAATGGAAGAAAAAG                         TTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATAA
genomic: AAAGATCCTTAACCGCCACAAGATTAAAAACATGGAAATGGAAGAAAAAGgtctgaatca ... tttgttgcagTTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATAA
EST: gi|254330248|gb|GR841513.1|GR841513
EST:     AAAGATCCTTAACCGCCACAAGATTAAAAACATGGAAATGGAAGAAAAAG                         TTAGAAGAGAAATCAAA-TTTTAAGATTGTTTATGCATCATCACATTATAA
genomic: AAAGATCCTTAACCGCCACAAGATTAAAAACATGGAAATGGAAGAAAAAGgtctgaatca ... tttgttgcagTTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATAA
EST: gi|193456839|gb|FK422675.1|FK422675
EST:     AAGATCCTTAACCGCCACAAGAATTAAAAACATGGAAATGGAAGAAAAAG                         TTAGAAGAGAAATCAAAATTTTAAGATTGTTTTATGC
genomic: AAGATCCTTAACCGCCACAAGA-TTAAAAACATGGAAATGGAAGAAAAAGgtctgaatca ... tttgttgcagTTAGAAGAGAAATCAAAATTTTAAGATTGTTT-ATGC
EST: gi|298197665|gb|HO045144.1|HO045144
EST:     AAAGATCCTTAACCGCCACAAGATTAAAAACATGGAAATGGAAGAAAAAG                         TTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATAA
genomic: AAAGATCCTTAACCGCCACAAGATTAAAAACATGGAAATGGAAGAAAAAGgtctgaatca ... tttgttgcagTTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATAA
EST: gi|19270081|gb|BM886337.1|BM886337
EST:     AAAGATCCTTAACCGCCACAAGATTAAAAACATGGAAATGGAAGAAAAAG                         TTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATAA
genomic: AAAGATCCTTAACCGCCACAAGATTAAAAACATGGAAATGGAAGAAAAAGgtctgaatca ... tttgttgcagTTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATAA
EST: gi|209725162|gb|BW659832.1|BW659832
EST:     AAAGATCCTTAACCGCCACAAGATTAAAAACATGGAAATGGAAGAAAAAG                         TTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATAA
genomic: AAAGATCCTTAACCGCCACAAGATTAAAAACATGGAAATGGAAGAAAAAGgtctgaatca ... tttgttgcagTTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggttaaatattcttacaagttgtaatgtttttattcactccaatttgttgcagTTAGAAGAGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATAAGACTATATGAGGTTGTAGAAACCCCAACAGACATATATGTTGTTATGGA
           ttcttac  putative branch site (score: 2)
                     ttgtaatgtttttatt  TA-rich tract