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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttattcctcttcaattcttcccttccttgtgcatttttaccaattcgtaggggtttccctttctcttgtttgtttcagCGACTACACGTTCGCCGATGTTGAGAATTTGGAGCATTGCGCTAGGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCTCTCGATCTCTTC

Basic information

species Glycine max
transcript GLYMA13G00980.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284560|gb|AW597148.1|AW597148
EST:     CCACCTTCTCAATCTTCCTTCACAGCCGG                         CGACTACACGTTCGCCGATGTTGAGAATTTGGAGCATTGCGCTAGGTATCT
genomic: CCACCTTCTCAATCTTCCTTCACAGCCGGgttagtttat ... tttgtttcagCGACTACACGTTCGCCGATGTTGAGAATTTGGAGCATTGCGCTAGGTATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttgtgcatttttaccaattcgtaggggtttccctttctcttgtttgtttcagCGACTACACGTTCGCCGATGTTGAGAATTTGGAGCATTGCGCTAGGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCTCTCGATCTCTTC
                              tttccctttctcttgt  CT-rich tract
         attttta  TA-rich tract