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gtatcttattaatcatcgccaccaccaccaccaccatcttttatcattataatatatatatatatatatatatatatatatatatatatatatatttatttatctggtcttgtttcttattttcagACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAGAAGAGAAGGCCAAAGCAGGAAAGGAAGACAAG
species | Glycine max |
transcript | GLYMA13G00950.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCACCTCCATCTACCGCGGCGTCACCCG ACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAGEST: gi|37995737|gb|CF807326.1|CF807326
genomic: CGCACCTCCATCTACCGCGGCGTCACCCGgtatcttatt ... ttattttcagACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAG
EST: ACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCG ACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAGEST: gi|21637582|gb|BM107737.1|BM107737
genomic: ACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCGgtatcttatt ... ttattttcagACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAG
EST: ACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCG ACATAGATGGACGGGAAAGATACGAAGGTCATCTATGGGACAATAGTTTGTEST: gi|6481417|gb|AW200688.1|AW200688
genomic: ACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCGgtatcttatt ... ttattttcagACATAGATGGACGGGAA-GATACGAAGCTCATCTATGGGACAATAGTT-GT
EST: ACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCG ACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAG
genomic: ACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCGgtatcttatt ... ttattttcagACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAG
atatatatatatatatatatatatttatttatctggtcttgtttcttattttcagACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAGAAGAGAAGGCCAAAGCAGGAAAGGAAGACAAG
tcttgtttcttatttt CT-rich tract
tatatatatatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcttattaatcatcgccaccaccaccaccaccatcttttatcattataatatatatatatatatatatatatatatatatatatatatatatttatttatctggtcttgtttcttattttcagACATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAATAGTTGTAGAAGAGAAGGCCAAAGCAGGAAAGGAAGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA