1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aattcctcagtctgtataccctacactgcatgaaataagcttccgtcaatatgttatgtttgataattcttgtgacatgtctttcaatttgctactgcagTGAAGGCTTTCCCAAAAGACAATCCTAGTCAACCATGCAGGTTGACTGCCTTTGTGGGCTACAAAGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAA
species | Glycine max |
transcript | GLYMA12G36940.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCCCTTGGCTTTCTCCCAAGGAAGCGAGCTTCTCGTCATCGCGGAAAGG TGAAGGCTTTCCCAAAAGACAATCCTAGTCAACCATGCAGGTTGACTGCCTEST: gi|151408452|gb|EV278260.1|EV278260
genomic: TTCCCTTGGCTTTCTCCCAAGGAAGCGAGCTTCTCGTCATCGCGGAAAGGgtgatcctct ... gctactgcagTGAAGGCTTTCCCAAAAGACAATCCTAGTCAACCATGCAGGTTGACTGCCT
EST: TTCCCTTGGCTTTCTCCCAAGGAAGCGAGCTTCTCGTCATCGCGGAAAGG TGAAGGCTTTCCCAAAAGACAATCCTAGTCAACCATGCAGGTTGACTACCT
genomic: TTCCCTTGGCTTTCTCCCAAGGAAGCGAGCTTCTCGTCATCGCGGAAAGGgtgatcctct ... gctactgcagTGAAGGCTTTCCCAAAAGACAATCCTAGTCAACCATGCAGGTTGACTGCCT
tcaatatgttatgtttgataattcttgtgacatgtctttcaatttgctactgcagTGAAGGCTTTCCCAAAAGACAATCCTAGTCAACCATGCAGGTTGACTGCCTTTGTGGGCTACAAAGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAA
gtttgat putative branch site (score: 5)
ttatgtttgataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattcctcagtctgtataccctacactgcatgaaataagcttccgtcaatatgttatgtttgataattcttgtgacatgtctttcaatttgctactgcagTGAAGGCTTTCCCAAAAGACAATCCTAGTCAACCATGCAGGTTGACTGCCTTTGTGGGCTACAAAGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - cctcagt
- - - - - - - - - - - -cactgca
- - - - - - - - - - - - - - - - - - - gcttccg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttgtg