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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaagctcggcatgatcataaatgattttatatcattaacgtcctctgtttcttaattattatacctttaactaatttcaatgttttattgatgatgcagCTTGATGACTGGGTTCTGTGTCGTATCTACAAGAAGAACTCGAGTGCACAGAAGGCGGTGCAAAACGGCGTCGTTCCGAGCAACGAGCACACTCAATACA

Basic information

species Glycine max
transcript GLYMA12G35000.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254321699|gb|GR825016.1|GR825016
EST:     TGCACGAGTATCGCCTCCTCGACTCTTCCCGAAAAAACACCGGCACCAAG                         CTTGATGACTGGGTTCTGTGTCGTATCTACAAGAAGAACTCGAGTGCACAG
genomic: TGCACGAGTATCGCCTCCTCGACTCTTCCCGAAAAAACACCGGCACCAAGgtatatacac ... gatgatgcagCTTGATGACTGGGTTCTGTGTCGTATCTACAAGAAGAACTCGAGTGCACAG
EST: gi|163923386|gb|EH039689.1|EH039689
EST:     TGCACGAGTATCGCCTCCTCGACTCTTCCCGAAAAAACACCGGCACCAAG                         CTTGATGACTGGGTTCTGTGTCGTATCTACAAGAAGAACTCGAGTGCACAG
genomic: TGCACGAGTATCGCCTCCTCGACTCTTCCCGAAAAAACACCGGCACCAAGgtatatacac ... gatgatgcagCTTGATGACTGGGTTCTGTGTCGTATCTACAAGAAGAACTCGAGTGCACAG
EST: gi|12490050|gb|BG043571.1|BG043571
EST:     TGCACGAGTATCGCCTCCTCGACTCTTCCCGAAAGAACACCTGCACCAAG                         CTTGATGACTGAGTTGTGTGTCGTATGTACATGAGGAACTCGAGTGCACAG
genomic: TGCACGAGTATCGCCTCCTCGACTCTTCCCGAAAAAACACCGGCACCAAGgtatatacac ... gatgatgcagCTTGATGACTGGGTTCTGTGTCGTATCTACAAGAAGAACTCGAGTGCACAG
EST: gi|19271096|gb|BM887352.1|BM887352
EST:     TGCACGAGTATCGCCTCCTCGACTCTTCCCGAAAAAACACCGGCACCAAG                         CTTGATGACTGGGTTCTGTGTCGTATCTACAAGAAGAACTCGAGTGCACAG
genomic: TGCACGAGTATCGCCTCCTCGACTCTTCCCGAAAAAACACCGGCACCAAGgtatatacac ... gatgatgcagCTTGATGACTGGGTTCTGTGTCGTATCTACAAGAAGAACTCGAGTGCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtttcttaattattatacctttaactaatttcaatgttttattgatgatgcagCTTGATGACTGGGTTCTGTGTCGTATCTACAAGAAGAACTCGAGTGCACAGAAGGCGGTGCAAAACGGCGTCGTTCCGAGCAACGAGCACACTCAATACA
       ttaattattatacctt  TA-rich tract