1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caataaatacttactccttttattagggcaccgattcataaaaccctttattttatcacacattagtaaggttgttaactcaagtttttcattttggcagTTTAACACAAAATATTATTATGAAGTTGGAATTGGGCATACTACTAGGCAATTTTGGTTTGTGACTCCTCCTGAAGTTCACCCTGATGCGCCTTATACAT
species | Glycine max |
transcript | GLYMA12G34960.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAATTATTCTTCTGGTTTTATACATCACCGCACCCTTACAGATTTAGAG TTTAACACAAAATATTATTATGAAGTTGGAATTGGGCATACTACTAGGCAAEST: gi|18040173|gb|BM308467.1|BM308467
genomic: TCAATTATTCTTCTGGTTTTATACATCACTGCACCCTTAGAGATTTAGAGgtaagagggc ... attttggcagTTTAACACAAAATATTATTATGAAGTTGGAATTGGGCATACTACTAGGCAA
EST: TCAATTATTCTTCTGGTTTTATACATCACTGCACCCTTAGAGATTTAGAG TTTAACACAAAATATTATTATGAAGTTGGAATTGGGCATACTACTAGGCAAEST: gi|298177766|gb|HO027319.1|HO027319
genomic: TCAATTATTCTTCTGGTTTTATACATCACTGCACCCTTAGAGATTTAGAGgtaagagggc ... attttggcagTTTAACACAAAATATTATTATGAAGTTGGAATTGGGCATACTACTAGGCAA
EST: TCAATTATTCTTCTGGTTTTATACATCACTGCACCCTTACAGATTTAGAG TTTAACACAAAATATTATTATGAAGTTGGAATTGGGCATACTACTAGGCAAEST: gi|16997191|gb|BM086563.1|BM086563
genomic: TCAATTATTCTTCTGGTTTTATACATCACTGCACCCTTAGAGATTTAGAGgtaagagggc ... attttggcagTTTAACACAAAATATTATTATGAAGTTGGAATTGGGCATACTACTAGGCAA
EST: TCAATTATTCTTCTGGTTTTATACATCACTGCACCCTTAGAGATTTAGAG TTTAACACAAAATATTATTATGAAGTTGGAATTGGGCATACTACTAGGCAAEST: gi|18735287|gb|BM528677.1|BM528677
genomic: TCAATTATTCTTCTGGTTTTATACATCACTGCACCCTTAGAGATTTAGAGgtaagagggc ... attttggcagTTTAACACAAAATATTATTATGAAGTTGGAATTGGGCATACTACTAGGCAA
EST: TCAATTATTCTTCTGGTTTTATACATCACTGCACCCTTAGAGATTTAGAG TTTAACACAAAATATTATTATGAAGTTGGAATTGGGCATACTACTAGGCAA
genomic: TCAATTATTCTTCTGGTTTTATACATCACTGCACCCTTAGAGATTTAGAGgtaagagggc ... attttggcagTTTAACACAAAATATTATTATGAAGTTGGAATTGGGCATACTACTAGGCAA
ctttattttatcacacattagtaaggttgttaactcaagtttttcattttggcagTTTAACACAAAATATTATTATGAAGTTGGAATTGGGCATACTACTAGGCAATTTTGGTTTGTGACTCCTCCTGAAGTTCACCCTGATGCGCCTTATACAT
tgttaac putative branch site (score: 2)
tttttcatttt putative PPT
aagtttttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caataaatacttactccttttattagggcaccgattcataaaaccctttattttatcacacattagtaaggttgttaactcaagtttttcattttggcagTTTAACACAAAATATTATTATGAAGTTGGAATTGGGCATACTACTAGGCAATTTTGGTTTGTGACTCCTCCTGAAGTTCACCCTGATGCGCCTTATACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttgtt