Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgttagacaaggggggatcatacatgtcaagtgtcataattttaatgaaagtgatttttccctaatgataacactaaattgttattatgtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGT

Basic information

species Glycine max
transcript GLYMA12G34770.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34770.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv19s0014g03660.t01 (Vitis vinifera), 3'ss of exon 2
-tatgttagacaaggggggatcatacatgtcaagtgtcataattttaatgaaagtgatttttccctaatgataacactaaattgttattatgtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGT
 |                 | | |   ||   | | | |  | | |   ||| || || |     |||||||   |||    |  ||| |  ||||   |||||||||| ||||| ||||| |||||||||||||| || |||||||||||||| || || ||||||||| | |||||||||||||| || ||| | ||||
ttgctcccctgttcctcaaaccctttctgattaatctgaacagtctgtagaatgtaatatgaaggtaatgatgctactttgatcctat-aaatggttttagGTGATCCACGGGCGTTGGGCTATGCTTGGAGCACTGGGCTGCATCACCCCAGAAGTCCTTGAGAAGTGGCTTAGAGTGGACTTCAAAGAACCAATCTGGT

upper sequence: GLYMA12G34770.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0181g00200.t01 (Vitis vinifera), 3'ss of exon 2
tatgttagacaaggggggatcatacatgtcaagtgtcataattttaatgaaagtgatttttccctaatgataacactaaattgttattatgtggtaca--agGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGT
          ||       || | |   ||  ||    | || |  ||      |      |  |   |  ||   ||||||||   |      |     |||| ||||| ||||| ||||| ||||| |||||  | || |||||||||||||| || || ||||||||| |||  |||||||||||||| ||||| ||||
--------gtaattcaaattcttcc---tcctgtaatctgatctgcattgccaagtgccaacaatgccggaaatggtaaattgtctgtgaaccatgttgtagGTAATCCACGGGCGGTGGGCTATGCTGGGAGCCTTTGGCTGCATCACCCCAGAAGTTCTTGAGAAGTGGGTGAAGGTGGACTTCAAGGAACCAGTTTGGT

upper sequence: GLYMA12G34770.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0181g00180.t01 (Vitis vinifera), 3'ss of exon 2
tatgttagacaaggggggatcatacatgtcaagtgtcataattttaatgaaagtgatttttccctaatgataacactaaattgttattatgtggtaca--agGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGT
          ||       || | |   ||  ||    | || |  ||      |      |  |   |  ||   ||||||||   |      |     |||| ||||| ||||| ||||| ||||| |||||  | || |||||||||||||| || || ||||||||| |||  |||||||||||||| ||||| ||||
--------gtaattcaatttcttcc---tcctgtaatctgatctgcattgccaagtgccaacaatgccggaaatggtaaattgtctgtgaaccatgttgtagGTAATCCACGGGCGGTGGGCTATGCTGGGAGCCTTTGGCTGCATCACCCCAGAAGTTCTTGAGAAGTGGGTGAAGGTGGACTTCAAGGAACCAGTTTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16342827|gb|BI968422.1|BI968422
EST:     ACCCAGAAGCA-TTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGNNNGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: ACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31463901|gb|CD405929.1|CD405929
EST:     GCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: GCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|151399495|gb|EV269366.1|EV269366
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31472966|gb|CD414994.1|CD414994
EST:     TGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: TGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|192294886|gb|FG987575.1|FG987575
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCCCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|298196971|gb|HO041738.1|HO041738
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATAGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|5666557|gb|AI930593.1|AI930593
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|298163012|gb|HO011745.1|HO011745
EST:     CTGGCATATCTGCAGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|12774812|gb|BG239760.1|BG239760
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|17153783|gb|BM143716.1|BM143716
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|15287302|gb|BI471193.1|BI471193
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31463254|gb|CD405282.1|CD405282
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31311223|gb|CD396426.1|CD396426
EST:     AACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: AACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|213598123|gb|DB964154.1|DB964154
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|20207981|gb|BQ134070.1|BQ134070
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|105633214|gb|DW246666.1|DW246666
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|15338218|gb|BI498882.1|BI498882
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|17518622|gb|BM187664.1|BM187664
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGAT-GTTTATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|9258396|gb|BE346543.1|BE346543
EST:     TGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTANGATGCATCACCCCA
genomic: TGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|13563052|gb|BG551272.1|BG551272
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|6915182|gb|AW396643.1|AW396643
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|5606915|gb|AI901013.1|AI901013
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGTAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31464885|gb|CD406913.1|CD406913
EST:     GGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: GGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|12774570|gb|BG239497.1|BG239497
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAACACTA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTA
EST: gi|23064566|gb|BU579339.1|BU579339
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|10233411|gb|BE802299.1|BE802299
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|15288230|gb|BI472121.1|BI472121
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|17519012|gb|BM188054.1|BM188054
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|120534449|gb|EH262582.1|EH262582
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|17964451|gb|BM271186.1|BM271186
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGA-CCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|7233121|gb|AW568471.1|AW568471
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|120534329|gb|EH262462.1|EH262462
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|151405911|gb|EV275726.1|EV275726
EST:     TTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|120534495|gb|EH262628.1|EH262628
EST:     CTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|209715958|gb|BW650975.1|BW650975
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|27423997|gb|CA935517.1|CA935517
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|192309655|gb|FK001003.1|FK001003
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|5606943|gb|AI901041.1|AI901041
EST:     CCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|9258659|gb|BE346806.1|BE346806
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|15287098|gb|BI470989.1|BI470989
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|5606519|gb|AI900617.1|AI900617
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|298189583|gb|HO037986.1|HO037986
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|15285078|gb|BI468969.1|BI468969
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31472361|gb|CD414389.1|CD414389
EST:     TGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: TGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|14011306|gb|BG726237.1|BG726237
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31464705|gb|CD406718.1|CD406718
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|298187892|gb|HO031849.1|HO031849
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|15288133|gb|BI472024.1|BI472024
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|15287287|gb|BI471178.1|BI471178
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|24205454|gb|BU964707.1|BU964707
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|12773145|gb|BG238072.1|BG238072
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|120533874|gb|EH262007.1|EH262007
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|15203104|gb|BI425872.1|BI425872
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|23057555|gb|BU578229.1|BU578229
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31560964|gb|CD486802.1|CD486802
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31561994|gb|CD487832.1|CD487832
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|20815198|gb|BQ299676.1|BQ299676
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31468116|gb|CD410144.1|CD410144
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|120530877|gb|EH259010.1|EH259010
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|10233556|gb|BE802444.1|BE802444
EST:     GCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: GCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|213606478|gb|DB958974.1|DB958974
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|7691059|gb|AW759193.1|AW759193
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31561786|gb|CD487624.1|CD487624
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31469033|gb|CD411061.1|CD411061
EST:     AGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: AGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|298175110|gb|HO014913.1|HO014913
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGACGACGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|21602384|gb|BQ612715.1|BQ612715
EST:     CTGGCTTATCTGCTGACCCGGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTTATCCATGGGAGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|22540167|gb|BU090010.1|BU090010
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|120530372|gb|EH258505.1|EH258505
EST:     CTGGCTTATCTGCTGACCCAGAAGTATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|192332274|gb|FK023923.1|FK023923
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|209722805|gb|BW669399.1|BW669399
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|9900622|gb|BE609590.1|BE609590
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|10232647|gb|BE801535.1|BE801535
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|120533123|gb|EH261256.1|EH261256
EST:     CTGGCTTATCTGCTGACCCAGAAGTATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
EST: gi|31459695|gb|CD401723.1|CD401723
EST:     CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG                         GTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA
genomic: CTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGgtagtttttt ... gtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgaaagtgatttttccctaatgataacactaaattgttattatgtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGT
                            cactaaa  putative branch site (score: 2)
                        ataacactaaattgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatgttagacaaggggggatcatacatgtcaagtgtcataattttaatgaaagtgatttttccctaatgataacactaaattgttattatgtggtacaagGTGATCCATGGGCGATGGGCCATGCTTGGAGCACTAGGATGCATCACCCCAGAGGTGCTAGAGAAGTGGTTGAGAGTGGACTTCAAGGAGCCAGTGTGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - gggggga
- - - - - - - - - - - -acatgtc