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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttgaataaaattgactgcttaagattgatgatgatggcatccacgggtttcaatttcttttattcttcataaatttgtgctctaatgcctcttgcagACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAG

Basic information

species Glycine max
transcript GLYMA12G33950.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G33950.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G045330_T02 (Zea mays), 3'ss of exon 2
------attttgaataaaatt-gactgctta-agattgatgatgatggcatccacgggtttcaatttcttttattcttcataaatttgtgctctaatgcctcttgcagACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAG
      | | ||  | |     | || |||  ||| |   | |     ||||    |   ||| || ||    | ||      |||   ||  ||||       ||||||||||||||||||||| |||||||| || ||||| || |||||||| || || ||||||
tcagatactctgtctgatgccagcctacttctagagtccggttagcctcatctc--gtcctcagttactcacgtgctgttcttattccggccttaat------cgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG

upper sequence: GLYMA12G33950.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G472625_T02 (Zea mays), 3'ss of exon 2
---attttgaataaaattgactgctt--aagattgatgatgatggcatccacgggtttcaatttcttttattcttcataaatttgtgctctaatgcctcttgcagACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAG
   | ||         |    ||||   | |  ||   |   ||  | ||     | |   | || |   ||  ||||   ||  |  |||        ||||||||||||||||||||||| |||||||| || || || || |||||||| || || ||||||
tcgaattccttcctgctcagttgctctgacgcctgcctagtttgttaccc-----tcttcgtgtcctcagttgctcatttgttcttcttctggccttaattgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGTACGGGCTCATTTGGGATCGTCTTCCAG

upper sequence: GLYMA12G33950.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G30980.1 (Arabidopsis thaliana), 3'ss of exon 2
attttgaataaa--attgactgcttaagattgatgatgatggcatccacgggtttcaatttc---ttttattcttcataaatttgtgctctaatgcctcttgcagACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAG
      ||||||  | |   |  |||    |  |||   ||     |     || ||| |     || || |||  | |  |||     |   || |  || |||||||| |||||||||||||||||||||||||| || |||||||| || ||||| ||||||
----caaataaataaataggtttttacatcttttgactttgtggctccttttttccaactctaagttctactctcta-atgttttcatccctctggcctttacagACCATTAGTTACATGGCCGAACGTGTTGTTGGAACAGGATCATTCGGAATTGTATTCCAG

upper sequence: GLYMA12G33950.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv12s0028g01810.t01 (Vitis vinifera), 3'ss of exon 2
attttgaa---taaaattgactgcttaagattgatgatgatggcatccacgggtttcaatttcttttattctt-cataaatttgtgctctaatgcctcttgcagACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAG
  ||||||   || |||||  |  |   ||||  |||   ||   | |  |  ||    || |   ||    | | ||    | |  | | |||| ||||||||||||||||||||||||| || ||  |||| ||||||||||| ||||| |||||||| |||
--tttgaaaagtagaattgtttatt--ggattcgtgaatctgtgtttcctgatttgttcttcccagtaaaaatgcttaggcctctcttgtgatgcttcttgcagACCATCAGTTACATGGCAGAGCGCATTGTAGGCACTGGATCGTTTGGAATTGTTTTTCAG

upper sequence: GLYMA12G33950.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S306_43V6.2 (Physcomitrella patens), 3'ss of exon 3
attttgaataaaattgactgcttaagattgatgatgatggc----atccacgggtttcaatttcttttattcttcataaatttgtgctctaatgcctcttgcagACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAG
 ||||     ||  |  |      | ||  ||| ||  | |    | | ||   ||| |  | ||| | |||||   ||       |   ||||     ||||||| ||||| ||   ||| |||||||||||||||||||||||||| || ||||| ||||||
cttttcctggaagcttgccaaaggacatgaatggtgcagactatcagctacttattttatctacttattttctttggaacaaacgacatgaatgg----tgcagACGATCAGCTATTCGGCAGAACGTGTTGTTGGCACTGGATCATTCGGGATTGTCTTCCAG

upper sequence: GLYMA12G33950.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 3
---attttgaataaaattgactgcttaagattgatgatgatggcatccacgggtttcaatttcttttattcttcataaatttgtgctcta-atgcctcttgcagACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAG
     ||||       | |||| | | || |   |  |||  ||    |   ||    |  | |  |  | ||  |     |||  |  |   |  |    ||||| || || |||   || ||||| |||||||||||||||||||| || || |||||||||
tgcgctttgtcagggctcgactacgtcaggtcc-tcctgaaagctggtaaaagt---gacctgtactgatatttgttgccctgtattgcatgagtgttgcacagACTATTAGCTACTGTGCAGAACGAGTTGTTGGCACTGGATCATTCGGGATCGTTTTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgggtttcaatttcttttattcttcataaatttgtgctctaatgcctcttgcagACCATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGCATTGTTTTCCAG
                                     ctctaat  putative branch site (score: 3)
                                           tgcctctt  CT-rich tract
     tttcaatttcttttat  TA-rich tract