Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgtgttaattcaacttattgtctgtgtgttgtgagttatcgtttttctaagagaataacctaattcgatttgagtttgattactggtttagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG

Basic information

species Glycine max
transcript GLYMA12G32060.4
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G32060.3 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g47870.1 (Oryza sativa), 3'ss of exon 2
--------------------------gtaagcgtgttaattcaacttattgt--ctgtgtgttgtgagttatcgtttt--tctaagagaataacctaattcgatttgagtttgattac-----tggtttagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG
                          |   ||       | | |  |  |||  || |   || |  | | || | ||    |    | ||  | |     ||   | ||  |  | |     | || |||| || ||||||||||| |||||||| |||||||| |||||||| ||||| || |||||||
gtgagcacgcgcgccgctggccttccgctcgccc-ccgctccgatctgctgttcctttagattctagggtttcttcttagcttgttggtatggcttgtgatgacgcgggtgcgcgtgcgtgtgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG

upper sequence: GLYMA12G32060.3 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G361074_T01 (Zea mays), 3'ss of exon 2
gtaagcgtgttaattcaacttattg--------tctgtgtgttgtgagttatcgtttt--tctaagagaataacctaattcgatttgagtttgattactggtttagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG
|| |||  |      |   || ||         ||| | |||| ||  ||   | |||  |||||          |    || |  | || ||  |  || | |||| || ||||||||||| |||||||| |||||||| |||||||| ||||| || |||||||
gtgagcacgccgcccctcgttcttccttccccttctatttgttctggttttgtgctttgatctaacctcgcttgttgtggcggtccgcgtctgtctgttg-tgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG

upper sequence: GLYMA12G32060.3 (Glycine max), 3'ss of exon 2
lower sequence: EFJ06425 (Selaginella moellendorffii), 3'ss of exon 1
gtaagcgtgttaattcaacttattgtctgtgtgttgtgagttatcgtttttctaagagaataacc--taatt---cgatttg----agtttgattactggtttagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG
||||| |  ||  ||  | |    |    | |     | |   || || | |  | |   |       || |   |||||||    | |   || |  | | |  | || ||||||||||| |||||||| |||||||| ||||| ||||||||           
gtaaggggattgtttgcattgtgagagattatcgatcgcgccctctttctccagACATTGTGGTGGACAACTGCGCGATTTGCCGGAATCACATCATGGATCTGTGCATCGAGTGCCAGGCAAACCAGGCCAGCGCCACGAGCGAAGAATGCAC-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17152950|gb|BM142883.1|BM142883
EST:     TATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCTgtaagcgtgt ... actggtttagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|17023367|gb|BM094401.1|BM094401
EST:     TATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCTgtaagcgtgt ... actggtttagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|4396229|gb|AI495226.1|AI495226
EST:     TATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCTgtaagcgtgt ... actggtttagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|6848570|gb|AW350860.1|AW350860
EST:     TATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCTgtaagcgtgt ... actggtttagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG
EST: gi|7590116|gb|AW705876.1|AW705876
EST:     TATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCT                         GTATTGAGTGCCAGGCCAACCAAGCTAGCGCCACTAGCGAGGAATGCACTG
genomic: TATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCTgtaagcgtgt ... actggtttagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcgtttttctaagagaataacctaattcgatttgagtttgattactggtttagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG
     tttttctaa  TA-rich tract